Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P16
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              201   4e-52
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 30   1.8  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  201 bits (490), Expect = 4e-52
 Identities = 94/133 (70%), Positives = 112/133 (84%), Gaps = 2/133 (1%)
 Frame = +2

Query: 59  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 238
           +P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR++NGG
Sbjct: 7   DPENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRKYNGG 66

Query: 239 VGRCAQAKQFGT--TQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPC 412
           VGR AQAK      +QGRWPKKSAE LLQLL+NAESNA+ K LDVD LV++HIQVN AP 
Sbjct: 67  VGRKAQAKNLKVPGSQGRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPS 126

Query: 413 LRRRTYRAHGRIN 451
           +RRRTYRAHGRIN
Sbjct: 127 MRRRTYRAHGRIN 139


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 257 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 436
           AKQ    +G WP     FL+  + N     D  +      +   IQ N+  C++++ Y+A
Sbjct: 202 AKQTCVVEGAWPLVENHFLIVQVTNVPL-VDGSSATATNKITVIIQENKDSCVQQKIYKA 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,207,913
Number of Sequences: 59808
Number of extensions: 423432
Number of successful extensions: 1237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)