Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P15
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    53   4e-08
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   4.3  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   5.7  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   7.6  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 13/123 (10%)
 Frame = +2

Query: 329 NAVAELKRPNFVLILTDD---QDVVLGGMDPMT-NVQRFIGKEGITFTNSYVTSPICCPS 496
           N  AE K+PNF++I+ DD    DV   G +  T N++R + KEG+  TN + T+  C P+
Sbjct: 4   NKQAESKKPNFLVIVADDLGWSDVSPFGSEIHTPNIER-LAKEGVRLTN-FHTASACSPT 61

Query: 497 RASLLTGMYVH------NHKTVN--NSLHGGCYG-ENWKYHEKQTFATILQEAGYDTFYA 649
           R+ LL+G   H        +TV   + + GG  G E +          ILQEAGY T  +
Sbjct: 62  RSMLLSGTDNHIAGLGQMAETVRRFSKVWGGKPGYEGYLNDRVAALPEILQEAGYYTTMS 121

Query: 650 GKY 658
           GK+
Sbjct: 122 GKW 124


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 108 AKKGVVAFVKDFYYDPFKWSLVKSVGFFTVGVVIASECTG 227
           A  G+V  + D+ +   KWS +        G+V A+ C G
Sbjct: 280 AVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAG 319


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 701 VPPGWTEWRGLVGNSVYYNYTLSNN 775
           +PPGWTE +   G   Y+N  L  +
Sbjct: 5   LPPGWTEHKAPSGIPYYWNAELKKS 29


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 36  SSGIIELSQV-IVSKKQLPLFELIMAKKGVVAFVKDFYYDPFKWSLVKSVGF-FTVGVVI 209
           SS +IE+ +   +S  Q  L+E  +        + DFY  P  WS    +       V +
Sbjct: 126 SSLVIEVEENGHLSNMQGSLYETPLRILDAPGLLDDFYISPLAWSTNGELAVALAQNVYL 185

Query: 210 ASECTGLEIMPAMP 251
            SE +G  IM   P
Sbjct: 186 WSEISGPSIMELSP 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,315
Number of Sequences: 5004
Number of extensions: 76002
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)