Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P15
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1324 + 32659752-32661972,32662067-32662761                       33   0.37 
11_06_0149 - 20636801-20637044,20637859-20639180                       31   0.86 
03_04_0134 - 17593449-17594702                                         29   6.0  
02_05_0977 - 33239887-33240566,33241010-33241985                       29   6.0  
02_04_0178 + 20672705-20672919,20673385-20673486,20673925-206740...    28   8.0  
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700...    28   8.0  
01_01_0680 + 5217633-5219072                                           28   8.0  

>04_04_1324 + 32659752-32661972,32662067-32662761
          Length = 971

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +2

Query: 593  EKQTFATILQEAGYDTFYAGKYLNQYGTKEAGGPXVVPPGWTEWRGLVGNSVYYNYTLSN 772
            E+  F   LQ A Y      +Y      +   G  + P GW+EW G VG    Y    +N
Sbjct: 860  EQALFPVRLQIASYLGRPWKEYARTVVMESVIGDFIKPEGWSEWMGDVGLKTLYYAEYAN 919

Query: 773  NGVPTFSTNXYLT 811
             G P   T+  +T
Sbjct: 920  TG-PGAGTSKRVT 931


>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 590 HEKQTFATILQEAGYDTFYAGKYLNQYGTKEAGGPXVVPPGWTEWRGLVGNSVYYNYTLS 769
           H+    A +L E G D  ++G +   Y    +GG   +PP   E RG   + ++ ++  +
Sbjct: 137 HDPLWRALVLDELGGDFAFSGSWRATYIAAASGGRAHLPPRGLEIRGFYSDYLFQSWLCA 196

Query: 770 N 772
           N
Sbjct: 197 N 197


>03_04_0134 - 17593449-17594702
          Length = 417

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 400 WNG--SDDECSTIYRERRHNIH*LLCDVTDMLSKSSQFADRHVRSQ 531
           WN   SD+  S +Y    H+ H  + D    LS SS +AD  +R++
Sbjct: 214 WNSRPSDEYSSLMYNSSYHHHHDAVSDDDLELSLSSPYADTEIRTK 259


>02_05_0977 - 33239887-33240566,33241010-33241985
          Length = 551

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 698 VVPPGWTEWRGLVGNSVYYNYTLSNNG 778
           + P GW EW G  G S  Y     N G
Sbjct: 476 IAPAGWLEWSGQFGLSTLYYGEYGNTG 502


>02_04_0178 +
           20672705-20672919,20673385-20673486,20673925-20674002,
           20674046-20674058
          Length = 135

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 511 DRHVRSQPQDREQ*SSRRMLWRELEISRETDV 606
           D+H + Q QD      R+ +W  + +SR+T +
Sbjct: 90  DKHYQQQKQDVSSRKQRKKIWIHIGMSRQTSI 121


>02_02_0121 +
           7005356-7005418,7007533-7007632,7007713-7007810,
           7007933-7008021,7008111-7008171,7008253-7008339,
           7008409-7008486,7008583-7008639,7008731-7008786,
           7008877-7009012,7009103-7009324
          Length = 348

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 638 TFYAGKYLNQYGTKEAGGPXVVPPGWTEW--RGLVGNSVYY 754
           T +A KY ++        P   PP WTEW    +  N +YY
Sbjct: 134 TLFAAKYRDRVLGLILVSPLCKPPTWTEWFYNKVASNLLYY 174


>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 332 AVAELKRPNFVLILTDDQDVVLGGMDPMTNVQRFIGKEGITFTNSYVTSP-ICCPSRASL 508
           A  +L++P  +LI +D             ++ R IG      T      P +  P+  S+
Sbjct: 83  AQVKLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAATGLVPIFPTLTFPNHYSI 142

Query: 509 LTGMYVHNHKTVNN 550
            TG+Y  +H  +NN
Sbjct: 143 ATGLYPSSHGIINN 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,444,828
Number of Sequences: 37544
Number of extensions: 479913
Number of successful extensions: 1030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)