Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P15
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.21 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.0  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +3

Query: 57  SQVIVSKKQLPLF----ELIMAKKGVVAFVKDFY 146
           S+ +V  K +P F    +LI+ KK    FVKD Y
Sbjct: 31  SRGVVGPKPVPFFGTTKDLILVKKSTAHFVKDIY 64


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 708 RAGQNGAAWSGIQFTTTILC 767
           R   +G+   G++FTTT+ C
Sbjct: 142 RLSGDGSVTYGMRFTTTLAC 161


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 758 SCSKLNSRPSRAILSSPGVPPXGHRLL*YHTDSNISPH 645
           +C      PS A    P   P  H    YH     SPH
Sbjct: 298 ACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPH 335


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 628 GFLKYSSERLFLVIFPVLSI 569
           GF+    +RLFL IF + SI
Sbjct: 479 GFVAMVLDRLFLWIFTIASI 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,968
Number of Sequences: 438
Number of extensions: 6198
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)