Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P14
         (849 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   6e-11
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   1e-08
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)                 42   6e-04
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.042
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.17 
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.29 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.39 
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              31   1.6  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 30   2.7  
SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)                    30   2.7  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  29   4.8  
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)                       29   6.3  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 29   6.3  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          28   8.3  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 44/144 (30%), Positives = 73/144 (50%)
 Frame = +1

Query: 304 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 483
           +L L  SY YL  A +F+       GF K F K S +  E    L+K   +RGG++    
Sbjct: 208 NLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQD 267

Query: 484 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 663
               + D       E G  + ++  ALD +K + + +  +H+   K+ D    A++T +I
Sbjct: 268 IKKPEKD-------EWGCGMDSIQVALDLEKHVNQALLDLHKIAEKHGD----AQMTDFI 316

Query: 664 EEEFVSQQADTIRXLAGHTSDLKR 735
           E  F+++Q + I+ LAGH ++LKR
Sbjct: 317 EGNFLTEQVEAIKELAGHLTNLKR 340



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 31/131 (23%), Positives = 65/131 (49%)
 Frame = +1

Query: 343 ASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKGSNYT 522
           A++F     +  GFA  F+K +++ +      ++ + KRGG++    H  +K  +     
Sbjct: 1   AAHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRGGRVKL--HHIMKPCRD---- 54

Query: 523 VEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 702
              G+ + A+  AL  +K++   +  +H+    N     D ++  ++E  F+ +Q D+I+
Sbjct: 55  -HWGNGLMAMRDALYLEKEINHALLDLHQVADTN----RDPQVQDFLESNFLGEQVDSIK 109

Query: 703 XLAGHTSDLKR 735
            LA + S L+R
Sbjct: 110 TLANYVSTLQR 120


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 39/144 (27%), Positives = 72/144 (50%)
 Frame = +1

Query: 304 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 483
           +L L  SY Y+  A +F+       GF K F K S +  E    L K   +RGG++    
Sbjct: 140 NLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRGGRIVLQD 199

Query: 484 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 663
              +K  +  ++    G    A+  ALD +K + + +  +H+   K+ D    +++  ++
Sbjct: 200 ---IKRPERDDW----GCGQDAIQAALDLEKHVNQALLDLHKVAEKHGD----SQMQDWL 248

Query: 664 EEEFVSQQADTIRXLAGHTSDLKR 735
           E  ++++Q + I+ LAGH ++LKR
Sbjct: 249 ESHYLTEQVEAIKELAGHLTNLKR 272


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 37/144 (25%), Positives = 73/144 (50%)
 Frame = +1

Query: 304 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 483
           +L L  SY Y+  A +F+       GF K F + S +  E    L K   +RGG++    
Sbjct: 155 NLELYASYVYMSMAFHFDRDDVALPGFHKYFMEASHEEREHAEKLAKFQLQRGGRIVLQD 214

Query: 484 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 663
              +K  +  ++    G ++  +  ALD +K + + +  +H+   K+ D    +++  ++
Sbjct: 215 ---IKRPERDDWGC--GQDV--IQAALDLEKHVNQALHDLHKVAEKHGD----SQMQDWL 263

Query: 664 EEEFVSQQADTIRXLAGHTSDLKR 735
           E  ++++Q + I+ LAGH ++LKR
Sbjct: 264 ESHYLTEQVEAIKELAGHMTNLKR 287


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 37/144 (25%), Positives = 67/144 (46%)
 Frame = +1

Query: 304 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 483
           +L L  SY Y   A YF+    +  GF K F+K + +  E                    
Sbjct: 21  NLELYASYVYTSMACYFDREDVHLPGFHKFFKKQAHEERE-------------------- 60

Query: 484 HTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYI 663
           H   K ++      E G  + A+  ALD +K + + +  + +   KN D    A+++ +I
Sbjct: 61  HAEKKPERD-----EWGSGLEAMQTALDLEKHVNQALIELEKTAEKNGD----AQMSDFI 111

Query: 664 EEEFVSQQADTIRXLAGHTSDLKR 735
           E+ F+++Q ++IR L+G+ + LK+
Sbjct: 112 EDHFLTEQVESIRELSGYIAVLKK 135


>SB_46661| Best HMM Match : Ferritin (HMM E-Value=0.18)
          Length = 88

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 20/68 (29%), Positives = 42/68 (61%)
 Frame = +1

Query: 532 GHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRXLA 711
           G+ + A+  AL  +K++   +  +HR+  + +D    A++  +IEE F+++Q D+I+ L+
Sbjct: 8   GNGLMAMEDALALEKEILSSLQALHRKAQEEND----AQMQDFIEETFLNEQMDSIKQLS 63

Query: 712 GHTSDLKR 735
            + S L+R
Sbjct: 64  NYVSTLRR 71


>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +1

Query: 112 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 273
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +3

Query: 132 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 254
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 124 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 273
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 325 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 423
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +1

Query: 607 REVTKNSDLLHDAEITQYIE--------EEFVSQQADTIRXLAGHTSDLKRFITXNNG 756
           +EVT N+  L D  +TQ  E        EE+V +    IR +   T  +KR+IT +NG
Sbjct: 182 QEVT-NAVTLQDQPVTQSFEPTSEEEKVEEYVDEYGHVIRCITRRTLVIKRYITDDNG 238


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 572 RSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS 676
           ++SL     +S   SLKT+  ++M  SL TSRR S
Sbjct: 154 KTSLKTSLKASLKTSLKTSLKTSMKTSLKTSRRTS 188


>SB_6832| Best HMM Match : HLH (HMM E-Value=2.4e-14)
          Length = 189

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 654 SDLGIVEEVAVFSDFPVDEENPLGKLLLRVQ 562
           SDL  +E    FSDF ++E   LGKL LR++
Sbjct: 137 SDLDDLETDFTFSDFSLEEFPELGKLALRIK 167


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 557  KPWTRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS 676
            KP  R+SS     SSS+G S  +++SST   S  +SR +S
Sbjct: 1005 KPARRQSSSSSSSSSSSGSSSYSSSSSTGSSSSGSSRSSS 1044


>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 1034

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 603 PQGSH*KQRPPPRCRDHSIHRGGIRESAS 689
           P+G   K  PPP  R + ++ GG+  SA+
Sbjct: 678 PEGPQKKAAPPPPARPNQVNLGGLARSAT 706


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 566 TRRSSLPRGFSSSTGKSLKTATSSTMPRSLNTSRRNS 676
           +R++SL R   +S   SLKT+  +   +S NTS + S
Sbjct: 117 SRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRS 153


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +1

Query: 526 EVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRX 705
           E+G ++  L+KAL  +++LA +I  +  E T NS ++   E T    E  +S+  +    
Sbjct: 458 ELGRQVQELSKALSLKQELANKI--MQNEGTMNSKMIKQYEDTVRELETEISKLEEEKAK 515

Query: 706 LAGHTSDLKRFI-TXNNGK 759
           LA   +  K  + + ++GK
Sbjct: 516 LATALATAKTAVHSDSDGK 534


>SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 609 GSH*KQRPPPRCRDHSIHRGGIRESASRYDSXPRGSHLGP 728
           G H  + P      H   R G  ESA RYD   RG+H  P
Sbjct: 15  GDHDAESPETPSDGHGSARPGTTESAGRYD---RGTHPAP 51


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 409 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 504
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,533,962
Number of Sequences: 59808
Number of extensions: 494374
Number of successful extensions: 1355
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)