Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P12
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   100   9e-23
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   4.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   4.2  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.3  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   9.7  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  100 bits (240), Expect = 9e-23
 Identities = 46/94 (48%), Positives = 56/94 (59%)
 Frame = +2

Query: 74  PAKNVNATKYTRXHSTKSPRKGTLPRARXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRL 253
           P KN       R    K      L + + RYDRKQ G+GGQ+KP+F         +VLRL
Sbjct: 13  PGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRL 72

Query: 254 ECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 355
           EC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 73  ECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 101 YTRXHSTKSPRKGTLPRARXR--YDRKQQGYGGQSKPIF 211
           Y   H      K   P+A  R  +DR Q GY G + P +
Sbjct: 309 YITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYY 347


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 152 PWAACLSLDFLYCXTLCTLWHL 87
           P A  + L +LY  TL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 121 CTVXPCVLCGIYIFCRTXCAVLGRA 47
           C    CV+C + + CR  C ++  A
Sbjct: 30  CYPLYCVVCFVSVLCRLYCILMSAA 54


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 189 VVSPNPSSKRRQKPLRKLCSVLS 257
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,652
Number of Sequences: 5004
Number of extensions: 24351
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)