Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_P12
(458 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 107 6e-24
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 2e-10
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_57231| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_37245| Best HMM Match : Disintegrin (HMM E-Value=7.9) 27 7.5
SB_34515| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 7.5
SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 9.9
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12) 27 9.9
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 107 bits (256), Expect = 6e-24
Identities = 46/78 (58%), Positives = 55/78 (70%)
Frame = +2
Query: 122 KSPRKGTLPRARXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRC 301
K+ + + + RYDRKQ G+GGQ+KP+F IVLR+EC CK R Q+ LKRC
Sbjct: 36 KTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMECTQCKYRKQMPLKRC 95
Query: 302 KHFELGGDKKRKGQMIQF 355
KHFELGGDKKRKGQMIQF
Sbjct: 96 KHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 2e-10
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 239 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 337
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 71 RPAKNVNATKYTRXHSTKSPRKGTLPRARXRYDRKQQ 181
RP + + ++ R S + PR PR+R R DR+ +
Sbjct: 596 RPGRERSRERHGRERSRERPRSRERPRSRERSDRRDE 632
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 251 LECADCKVRSQVALKRCKHFELG 319
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_57231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 45 GARPKTAQXVLQKM*MPQSTQGXTV-QKVQGKARCPGLEXVMIVNSRVTVV 194
G+RPKT Q + M T G + QK+ KA G ++++++ ++V+
Sbjct: 151 GSRPKTCQYLTVDMVRTAKTNGGLIDQKMFKKAGKYGFYSLLLIDTNISVL 201
>SB_37245| Best HMM Match : Disintegrin (HMM E-Value=7.9)
Length = 227
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +2
Query: 14 C*YRAERTQKWCTSQNSAG-----RPAKNVNATKYTRXHSTKSPRKGTLPRARXRYDRKQ 178
C Y +RT+K +S N G R + ++ + +S++ PR+ R R R R++
Sbjct: 71 CGYEYDRTRKSMSSPNFQGSSRAHRTPQEGESSLKRKENSSQGPRQRLRVRLRYRICRER 130
Query: 179 QG 184
QG
Sbjct: 131 QG 132
>SB_34515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 35 TQKWCTSQNSAGRPAKNVNATKYTRXHSTKSPRK 136
T KWCT Q+ A P + V++T + P K
Sbjct: 50 TSKWCTVQDVASTPYRIVHSTPLADKLPSTQPSK 83
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 368 LEAFKIGSSVPFSSCHHQAQSACI 297
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_32063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 133 PWTFCTVXPCVLCGIYIFCRTXCAVLGRAPFLSA 32
P+TFC + P L + C ++G + F+ A
Sbjct: 80 PFTFCALTPTPLSAFLVLCPHTYLLIGLSRFVPA 113
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 275 RSQVALKRCKHFELGGDKKR 334
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 348 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 250
I+C F +P +KCLH F C L +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278
>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
Length = 433
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 149 WAACLSLDFLYCXTLCTLWHLHFLQDXLRCFGTCTIFE 36
W +CLSLD L L ++ +D RC C F+
Sbjct: 8 WLSCLSLDNLPTIPLASVLSYLNARDLARCSRVCRRFD 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,474,836
Number of Sequences: 59808
Number of extensions: 214600
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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