Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P12
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    98   2e-21
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    98   2e-21
Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical pr...    28   2.8  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 42/78 (53%), Positives = 54/78 (69%)
 Frame = +2

Query: 122 KSPRKGTLPRARXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRC 301
           K  ++    + R RYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +KRC
Sbjct: 28  KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRC 87

Query: 302 KHFELGGDKKRKGQMIQF 355
           KHFELGG KK +GQ+IQF
Sbjct: 88  KHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 42/78 (53%), Positives = 54/78 (69%)
 Frame = +2

Query: 122 KSPRKGTLPRARXRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRC 301
           K  ++    + R RYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +KRC
Sbjct: 28  KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPIKRC 87

Query: 302 KHFELGGDKKRKGQMIQF 355
           KHFELGG KK +GQ+IQF
Sbjct: 88  KHFELGGQKKSRGQVIQF 105


>Z75550-7|CAA99925.2|  195|Caenorhabditis elegans Hypothetical
           protein T22C1.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 176 VYDHNXF*PWA-ACLSLDFLYCXTLCTLWHL 87
           +YDH+ +  W    +S+ F++C   C +W +
Sbjct: 27  IYDHHYYPMWFWIVISVGFVFCTLSCAVWFM 57


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 245 LRLECADCKVRSQVALKRCKHFELGGDKK 331
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,547
Number of Sequences: 27780
Number of extensions: 149705
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)