Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_P11
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1286 + 36000741-36000796,36000885-36000939,36001036-360010... 44 1e-04
05_05_0113 - 22485243-22485500,22485847-22486009,22486138-224862... 42 7e-04
06_02_0031 + 10769375-10769785 32 0.42
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 30 2.2
04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339 29 3.9
12_01_0206 + 1555278-1555448,1555710-1555772,1556236-1556307,155... 29 5.1
11_01_0202 + 1606317-1606487,1606743-1606805,1607045-1607116,160... 28 9.0
10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404... 28 9.0
>01_06_1286 +
36000741-36000796,36000885-36000939,36001036-36001086,
36001962-36002053,36002301-36002378,36002778-36002931
Length = 161
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/86 (29%), Positives = 47/86 (54%)
Frame = +3
Query: 159 RIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEK 338
R+ LR V+ L+K ERIE + + E R+ A++++ + + G A+ ++
Sbjct: 14 RVSMLRTMVSQLVKHERIETTVAKAKEVRRKADQMV-QLGKEGTL--DAARRASAFVRGD 70
Query: 339 QLVHKLFKVLVPRFENSTVSYTKMIK 416
+VHKLF L R++N YT++++
Sbjct: 71 DVVHKLFTELAYRYKNRAGGYTRLLR 96
>05_05_0113 -
22485243-22485500,22485847-22486009,22486138-22486229,
22486832-22486882,22487013-22487067,22487207-22487262
Length = 224
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/86 (27%), Positives = 46/86 (53%)
Frame = +3
Query: 159 RIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEK 338
R+ LR V+ L+K ERIE + + E R A++++ + + G A+ ++
Sbjct: 14 RVSMLRTMVSQLVKHERIETTVAKAKEVRTKADQMV-QLGKEGTL--DAARRASAFVRGD 70
Query: 339 QLVHKLFKVLVPRFENSTVSYTKMIK 416
+VHKLF L R+++ YT++++
Sbjct: 71 NVVHKLFTELAYRYKDRAGGYTRLLR 96
>06_02_0031 + 10769375-10769785
Length = 136
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 271 SDISLSAYWRASSPRLIFNSILSNFINPVTVLRNLSILPSGPL 143
SD+S A W S P + S++ F+ P+ L LPS P+
Sbjct: 15 SDLSAQAPWYRSYPLFLAFSVIPRFLAPLLASAELISLPSSPI 57
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 285 GDCHKPTMDMANFWLLEKQLVHKLFKVLVPRFENSTVSYTKMIKAPKAQNTEHT 446
G C P +A+ WL + ++H L +V V S+ + APK +HT
Sbjct: 664 GWCFGPVTPIASRWLAKTSILHGLLQVTVVGLAISSQLFPYSTGAPKRVVLQHT 717
>04_01_0291 + 3848091-3848975,3849062-3849351,3858003-3858339
Length = 503
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 54 KITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRI 164
K+ + KL S+ R I+ R+LKN KG +G+I
Sbjct: 368 KLPKHTTPRKKLASRPRPKIRTSSRKLKNEKGEKGKI 404
>12_01_0206 +
1555278-1555448,1555710-1555772,1556236-1556307,
1556430-1556537,1556644-1556724,1556861-1556914,
1557020-1557145,1557228-1557317,1557603-1557725,
1557831-1557938,1558287-1558400,1558530-1558586,
1558667-1558741,1558915-1558989
Length = 438
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 30 IKNKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFER 209
I +K K +K M + ++ + +S +++ P R+ + G + +I + + VTG F+
Sbjct: 43 ILDKEKVLKHKMVE-QIKREISTMKLIKHPNVVRIYEVMGSKTKIYIVLEYVTGGELFDT 101
Query: 210 IELNIN-RGDEARQYAERLIS 269
I + R DEAR+Y ++LI+
Sbjct: 102 IVNHGRMREDEARRYFQQLIN 122
>11_01_0202 +
1606317-1606487,1606743-1606805,1607045-1607116,
1607244-1607351,1607497-1607538,1607965-1608018,
1608130-1608255,1608338-1608427,1608735-1608857,
1608963-1609070,1609412-1609573,1609655-1609711,
1609792-1609884
Length = 422
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 30 IKNKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFER 209
I +K K +K M + ++ + +S +++ P R+ + G + I + + VTG F+
Sbjct: 43 ILDKEKVLKHKMVE-QIKREISTMKLIKHPNVVRIYEVMGSKTNIYIVLEYVTGGELFDT 101
Query: 210 IELNIN-RGDEARQYAERLIS 269
I + R DEAR+Y ++LI+
Sbjct: 102 IVNHGRMREDEARRYFQQLIN 122
>10_07_0152 +
13439178-13439517,13440072-13440229,13440431-13440477,
13441115-13441178,13441600-13442237,13442328-13442562
Length = 493
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 350 MNKLFFKKPKIGHVHSWFVTVTMTDSF 270
+ KL F K + + SWFV M D+F
Sbjct: 441 IQKLVFSKVDVAELDSWFVRGNMVDAF 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,531
Number of Sequences: 37544
Number of extensions: 297078
Number of successful extensions: 692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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