Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P11
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-4|AAF60758.2|  194|Caenorhabditis elegans Hypothetical ...    82   5e-16
U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U97006-3|AAC47966.1|  470|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical pr...    23   9.5  

>AC024810-4|AAF60758.2|  194|Caenorhabditis elegans Hypothetical
           protein Y54E10A.7 protein.
          Length = 194

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
 Frame = +3

Query: 159 RIDKLRKTVTGLIKFERIELNINRGDEARQYAERLISEAIRHGDCHKPTMDMANFWLLEK 338
           R++ LR+ VT  ++ ER EL  NR  EAR Y ERLI   +  G   + T +M  +WL EK
Sbjct: 36  RLEVLRRIVTRTVREERAELKWNRAVEARPYLERLIQLGVERGPLDEYTAEMMEWWLPEK 95

Query: 339 QLVHKLFKVLVPRFENSTVSYTKMIKAPK------AQNTEHTNKI----VLELRGNPYPD 488
            L+ K+ +V+VPRF++    +T + + P        QN     K     VLE+ GNP+P 
Sbjct: 96  DLITKMHEVIVPRFQDRDSPFTSLFRLPPQRLQQFIQNKREVWKRYDIGVLEIDGNPFPQ 155

Query: 489 LIVKQPNNRLWIQNVLLDAAKYDYRQS 569
           +   + +    I +VLL  A  +++++
Sbjct: 156 IQADRVDQSESILDVLLADALRNHQKN 182


>U23147-5|AAC46686.2|  308|Caenorhabditis elegans Hypothetical
           protein C18H9.1 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/101 (24%), Positives = 40/101 (39%)
 Frame = +3

Query: 360 KVLVPRFENSTVSYTKMIKAPKAQNTEHTNKIVLELRGNPYPDLIVKQPNNRLWIQNVLL 539
           +V +P  E ++ SY K  K PKA     +        G  +P LI      R    N  +
Sbjct: 153 RVTLPESEITSQSYRKYPKKPKAIGKVGSTGGNRNGMGAIHPTLISYPEEQRK--TNSRV 210

Query: 540 DAAKYDYRQSKISEIAANIGKDTQLSSSSLTANNKGGTQKE 662
              + +Y    I  I  NIG   +++ +     N+GG   +
Sbjct: 211 KNNRSNYHIGNIGNIGGNIGNGQKMNRNKNGGRNQGGNHPD 251


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -1

Query: 259 LSAYWRASSPRLIFNSILSNFINPVTVLRNLSILP-----SGPLRFFN 131
           L+AYW A + R I N+ LS+  NP+ +    S+ P     + P  FFN
Sbjct: 137 LAAYWFADNERAIANT-LSSMSNPIGIAVMYSLAPVFVNKTTPDNFFN 183


>U97006-3|AAC47966.1|  470|Caenorhabditis elegans Hypothetical
           protein C13F10.6 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +3

Query: 36  NKVKEIKITMNQAEVSKLVSKLRMNIKPEHRRLKNLKGPEGRIDKLRKTVTGLIKFERIE 215
           N++ E +I   +  V +++  +    K     ++N +     +D+       L + E +E
Sbjct: 104 NRIVEFEIRCRRFTV-QILDNIEKFPKLNRIIVRNARNFSFELDEESGDAAVLDRIESLE 162

Query: 216 LNINRGDEAR-QYAERLISEAIRHGDCHKPTMDMANFWLLEKQLV 347
           L+++R      +  +RLI+  ++H  CH       N W +E+ +V
Sbjct: 163 LHLDRQWCTEIERMKRLINPNLKHFCCHVNPSLSKNSWFIEEIMV 207


>Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical
           protein F22G12.8 protein.
          Length = 247

 Score = 23.4 bits (48), Expect(2) = 9.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 153 EGRIDKLRKTVTGLIKFERIELNINRGDEARQYAERLIS 269
           +  +D L +T  G++K   IEL IN+  +  +  E  +S
Sbjct: 67  KSELDNLVETTEGIMKSNGIELIINKEIDQTKIREIALS 105



 Score = 22.6 bits (46), Expect(2) = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 306 MDMANFWLLEKQLVHKLFKVLVPRF 380
           MD A  WL E  + +K  KVL+  F
Sbjct: 146 MDYAKDWLDEHMICYKEEKVLLATF 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,028
Number of Sequences: 27780
Number of extensions: 308441
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)