Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P10
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6461| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.7  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_20545| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_55295| Best HMM Match : Chordopox_E11 (HMM E-Value=1.4)             27   6.2  
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)        27   8.2  

>SB_6461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 262 LKLSYLKEINAKIIINTHEMNQHKI-YINLENIYHVEYKN 146
           L++ Y  ++N   +   +++N  ++ Y N  N+Y V+Y N
Sbjct: 120 LRVDYANDLNVLRVDYANDLNVLRVDYTNALNVYRVDYTN 159


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 174 SRFI*ILCWFIS*VFIIIFALISFKYDNFKG*FYFY 281
           ++ +  L W +S + +++    S +Y+ F G FY +
Sbjct: 594 AKLVVALVWVVSFLLLVLPLFFSMRYEKFNGDFYCF 629


>SB_20545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 238 INAKIIINTHEMNQHKIYINLENIY 164
           +   + IN HEM++ ++ +NL+++Y
Sbjct: 3   VELSVQINNHEMHKTELCVNLDSVY 27


>SB_55295| Best HMM Match : Chordopox_E11 (HMM E-Value=1.4)
          Length = 504

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 238 INAKIIINTHEMNQHKIYINLENIY 164
           +   + IN HEM++ ++ +NL+++Y
Sbjct: 3   VELSVQINNHEMHKTELCVNLDSVY 27


>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 334 IYILIVVLFCCYFLF 290
           +Y ++++ +CCYF F
Sbjct: 60  LYYIVIIAWCCYFFF 74


>SB_12975| Best HMM Match : Zona_pellucida (HMM E-Value=6.6e-12)
          Length = 515

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 321 LLFCFVVIFYLKSNRNK 271
           L+ CF++IF L+ N+NK
Sbjct: 472 LVVCFILIFVLRRNKNK 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,062,837
Number of Sequences: 59808
Number of extensions: 93584
Number of successful extensions: 218
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)