Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P09
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            29   3.6  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               29   3.6  
SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)                        29   6.4  
SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   8.4  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        28   8.4  
SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
 Frame = +3

Query: 180 GDCDLCVNPCCLA--LSACCLI----PCLCPNACG 266
           GDCD+C +  C +   S C  +     C CP++CG
Sbjct: 260 GDCDVCKDVSCTSPPFSTCVALNGRPACSCPSSCG 294


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 570 VIHHHHPSPNQPAVIINQPP 629
           +IHHHHPS +   +II+  P
Sbjct: 164 IIHHHHPSSSSIIIIIHHHP 183


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 159 LCFSFDCGDCDLCVNPCCLALSACCLIPC 245
           LC +  C     CV PCC+ L  CC + C
Sbjct: 340 LCRAVSCRVVLCCVVPCCVVL--CCAVSC 366


>SB_37223| Best HMM Match : ZZ (HMM E-Value=7.5)
          Length = 202

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 177 CGDCDLCVNPCCLALSACCLIPCLCPN 257
           C D DLC +PC +         C CPN
Sbjct: 102 CRDLDLCRDPCIVPAEGNKPASCQCPN 128


>SB_29572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 617

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 444 TMAVEDNLDILVAGVEGNRDSLRLVVEGRDIRVEEAAARLSLEDGARGWS 295
           T+AV+  +  L +   GNR S R+         EEAAA +  +   R WS
Sbjct: 22  TLAVDTEMSDLTSAGPGNRSSSRVRFSDAVSEEEEAAAAVPNKKKTRYWS 71


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 716  LKYATGFHIKNITIMHFSL*DYNVRDATXGTKSFQY 823
            LKY T   +K  TI+  +  D ++ D++  T SFQY
Sbjct: 2451 LKYETILFLKYETILFLNYDDLDMADSSISTLSFQY 2486


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 186 CDLCVNPCCLALSACCLI---PCLCPNAC 263
           C + + PCC+ L +CC++    C C  AC
Sbjct: 10  CCVLLMPCCVLLMSCCVMLMWYCSCRVAC 38


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 534  SKGTECSNSNRVDTRYCNPFFRNDQWLFIGTMAVEDNLDILVAGVEGNRDSLRLVVEGRD 355
            +K T+ SNSN +   Y N     + +     + V D+    +  ++ N D++R++    D
Sbjct: 1130 TKATKVSNSNEIREMYSNSDEMREMYSNSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSD 1189

Query: 354  -IRVEEA 337
             IRV ++
Sbjct: 1190 EIRVMDS 1196


>SB_11613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 576 HHHHPSPNQPAVIINQPPPP 635
           HHHH   +QP + I  PP P
Sbjct: 57  HHHHHHHHQPTITIIIPPSP 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,554,433
Number of Sequences: 59808
Number of extensions: 508339
Number of successful extensions: 1759
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)