Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P08
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    23   2.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.7  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    22   6.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.9  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
 Frame = -2

Query: 659 TSKVPILRSCSANFMAKGGMYRPAYDSPAMYSGAVRNSGNIIRNC---FKAVYRS-EAHS 492
           T+  P+L     N   +      A  SPA  S  ++N  ++I  C   F   ++  E   
Sbjct: 66  TNTEPLLSEALTNLPGEKWKEMRATLSPAFTSSKIKNMYSLISECAENFVDFFQGREQDV 125

Query: 491 SIFLTKPSLLSVKLKPAPTGLSMNNIEYPFNQVHSRSSIVSFFLLYE 351
            I        +  +  A  G+ +N+++ P N+ ++    ++ F  ++
Sbjct: 126 EIKEVFSRFSNDVIATAAFGIRVNSVQEPNNEFYAMGRSLTTFSAFQ 172


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 581 SPAMYSGAVRNSGNIIRNCFKAVYRSEAHSSIF 483
           SPAM     R+ G++I+N       + A S I+
Sbjct: 131 SPAMPHNLTRHDGSVIKNQGMPTMEAIARSGIW 163


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 260 LFRTGKYQKNVLELYC 213
           LF T + +KNV   YC
Sbjct: 84  LFMTSQIKKNVTRAYC 99


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 260 LFRTGKYQKNVLELYC 213
           LF T + +KNV   YC
Sbjct: 84  LFMTSQIKKNVTRAYC 99


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 399 PGPFTFFNSVVLLIVRERTDFV 334
           P PF +++    L   ER DFV
Sbjct: 21  PPPFGYYHEEPPLFYEERPDFV 42


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 462 VCKAEASADRVVDEQHR 412
           VCKA+     ++D+ HR
Sbjct: 73  VCKAKDEGSCIIDKTHR 89


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 462 VCKAEASADRVVDEQHR 412
           VCKA+     ++D+ HR
Sbjct: 73  VCKAKDEGSCIIDKTHR 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,122
Number of Sequences: 336
Number of extensions: 4591
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)