Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_P07
(606 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52434 Cluster: DNA-directed RNA polymerases I, II, and... 247 1e-64
UniRef50_O81097 Cluster: RNA polymerase I, II and III 16.5 kDa s... 138 1e-31
UniRef50_A5AWJ9 Cluster: Putative uncharacterized protein; n=1; ... 119 6e-26
UniRef50_Q5DAE1 Cluster: SJCHGC08401 protein; n=1; Schistosoma j... 105 8e-22
UniRef50_A0DFX5 Cluster: Chromosome undetermined scaffold_5, who... 101 1e-20
UniRef50_A7ET20 Cluster: UDP-glucose 4-epimerase Gal10; n=12; Pe... 95 9e-19
UniRef50_A2D8U6 Cluster: RNA polymerase Rpb8 family protein; n=1... 93 4e-18
UniRef50_Q4P603 Cluster: Putative uncharacterized protein; n=1; ... 90 4e-17
UniRef50_Q5CHU5 Cluster: RNA polymerase subunit 8c; n=2; Cryptos... 87 2e-16
UniRef50_Q5KBG4 Cluster: DNA-directed RNA polymerases i, ii, and... 84 2e-15
UniRef50_A2XP07 Cluster: Putative uncharacterized protein; n=1; ... 81 3e-14
UniRef50_Q92399 Cluster: DNA-directed RNA polymerases I, II, and... 79 8e-14
UniRef50_P20436 Cluster: DNA-directed RNA polymerases I, II, and... 77 3e-13
UniRef50_Q5BGY8 Cluster: Putative uncharacterized protein; n=1; ... 76 6e-13
UniRef50_A7AQQ3 Cluster: RNA polymerase subunit 8c, putative; n=... 75 1e-12
UniRef50_UPI00006CF85E Cluster: RNA polymerase Rpb8 family prote... 75 1e-12
UniRef50_A6QU50 Cluster: DNA-directed RNA polymerases i; n=1; Aj... 74 2e-12
UniRef50_Q4Q8I8 Cluster: RNA polymerase B subunit RPB8, putative... 71 2e-11
UniRef50_Q7RN09 Cluster: DNA-directed RNA polymerases i, ii, and... 71 2e-11
UniRef50_Q40944 Cluster: Putative RNA polymerase II subunit; n=1... 69 9e-11
UniRef50_UPI00004983D0 Cluster: RNA polymerase subunit Rpb8; n=1... 69 1e-10
UniRef50_Q2H0W3 Cluster: Putative uncharacterized protein; n=1; ... 66 6e-10
UniRef50_UPI00006CB425 Cluster: RNA polymerase Rpb8 family prote... 46 0.001
UniRef50_Q7QYG2 Cluster: GLP_162_7496_7044; n=2; Giardia intesti... 45 0.001
UniRef50_Q72G75 Cluster: Cbs domain proteins; n=1; Thermus therm... 38 0.18
UniRef50_A7IBU3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.56
UniRef50_Q8SRJ5 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 36 0.98
UniRef50_Q03213 Cluster: High-osmolarity-induced transcription p... 36 0.98
UniRef50_Q8MR48 Cluster: GH21870p; n=3; melanogaster subgroup|Re... 33 4.0
UniRef50_A1TSG8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_Q0BPE1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_A0Z9Q6 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_A3BYC8 Cluster: Putative uncharacterized protein; n=4; ... 33 6.9
UniRef50_Q4WG07 Cluster: Riboflavin biosynthesis protein Rib7, p... 33 6.9
UniRef50_A0YI84 Cluster: Putative uncharacterized protein; n=1; ... 32 9.2
>UniRef50_P52434 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC3; n=19; Eumetazoa|Rep: DNA-directed
RNA polymerases I, II, and III subunit RPABC3 - Homo
sapiens (Human)
Length = 150
Score = 247 bits (605), Expect = 1e-64
Identities = 115/150 (76%), Positives = 132/150 (88%)
Frame = +1
Query: 94 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N IYP+ LG+KFRLV+
Sbjct: 1 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60
Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGG 453
A+TL E+G D GE+NP + +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GG
Sbjct: 61 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG 120
Query: 454 LLMRLQGDANNLHGFEVDQHMYLLMKKLAF 543
LLMRLQGDANNLHGFEVD +YLLMKKLAF
Sbjct: 121 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF 150
>UniRef50_O81097 Cluster: RNA polymerase I, II and III 16.5 kDa
subunit; n=18; Eukaryota|Rep: RNA polymerase I, II and
III 16.5 kDa subunit - Arabidopsis thaliana (Mouse-ear
cress)
Length = 146
Score = 138 bits (333), Expect = 1e-31
Identities = 68/145 (46%), Positives = 99/145 (68%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
+LFEDIF V +DP+GKKFD+V+R+ S + +M + LD+N+ +YP+ +G+KF L LA T
Sbjct: 6 ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65
Query: 283 LRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLM 462
L +G PD G + P + AD +EY+M GK+Y+I + P + L YVSFGGLLM
Sbjct: 66 LNLDGTPDTGYFTP-GAKKTLADKYEYIMHGKLYKI-SERDGKTPKAEL--YVSFGGLLM 121
Query: 463 RLQGDANNLHGFEVDQHMYLLMKKL 537
L+GD ++ FE+DQ ++LLM+KL
Sbjct: 122 LLKGDPAHISHFELDQRLFLLMRKL 146
>UniRef50_A5AWJ9 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 305
Score = 119 bits (286), Expect = 6e-26
Identities = 71/168 (42%), Positives = 94/168 (55%), Gaps = 21/168 (12%)
Frame = +1
Query: 94 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
M LF DIF V +DP+GKKFD+VSR+ +SE M + LD+N+ IYPM GEKF + L
Sbjct: 1 MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60
Query: 274 ATTLRENGYPDGGEWNPLETEG---------------------NRADSFEYVMSGKVYRI 390
A+TL +G PD G + ++ G + AD FEYVM GK+Y+I
Sbjct: 61 ASTLDLDGTPDTGYYTQVKCCGMVVXLARTKRITAAVRVAGRKSLADKFEYVMHGKLYKI 120
Query: 391 EGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKK 534
E P + YVSFGGLLM L GD N ++DQ +LL++K
Sbjct: 121 --SEEGSGPNVKGVIYVSFGGLLMMLSGDPANTAKLDLDQRXFLLIRK 166
Score = 89.4 bits (212), Expect = 6e-17
Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Frame = +1
Query: 94 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
M F+DIF V DP GKKFD+VSR+ SE + M + LD+N YP+Q GEKFR+VL
Sbjct: 189 MVETFFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVL 248
Query: 274 ATTLRENGYPDGGEWNPLETEG---NRADSFEYVMSGKVYRIEGD 399
A TL + DG + T+G + AD F+YVM G +Y++ +
Sbjct: 249 APTL----HLDGADVTDYFTQGEXKSLADKFDYVMYGIIYKVSNE 289
>UniRef50_Q5DAE1 Cluster: SJCHGC08401 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC08401 protein - Schistosoma
japonicum (Blood fluke)
Length = 121
Score = 105 bits (252), Expect = 8e-22
Identities = 60/122 (49%), Positives = 82/122 (67%), Gaps = 8/122 (6%)
Frame = +1
Query: 202 MDLILDINSWIYPMQLGEKFRLVLATTLRENGYPDGGEWNPL----ETEGNRADS----F 357
M LILDI++ IY + G+KFR+VL TL D + + ET+ A+S F
Sbjct: 1 MGLILDIHALIYSLTKGDKFRMVLTKTLLNELTVDADDDDEDDAADETDEKLANSKMAEF 60
Query: 358 EYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKKL 537
+YV GK+YRIE ++ ++ ASRL+ YVSFGGLLM+L GDA+NL GF V +H+YL++KKL
Sbjct: 61 DYVCYGKIYRIETQDSGVD-ASRLSCYVSFGGLLMQLTGDASNLQGFRVGKHLYLMIKKL 119
Query: 538 AF 543
AF
Sbjct: 120 AF 121
>UniRef50_A0DFX5 Cluster: Chromosome undetermined scaffold_5, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_5,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 148
Score = 101 bits (242), Expect = 1e-20
Identities = 50/145 (34%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTL 285
L ++ F V+D+D G+ F RVSR+ C+S+S ++D+ LD+N IYP+ G ++R+++ +L
Sbjct: 8 LIDEYFKVEDIDQAGQSFKRVSRIKCKSKSGEVDMELDVNIDIYPIDKGSEYRVLIVRSL 67
Query: 286 RENGYPDGGEWNP--LETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLL 459
+ D G++ P + + + F+Y M G+V+++ D+ M + + SFGGL+
Sbjct: 68 GISQEMDQGKYKPEFSQIDNELLEKFQYAMFGRVFKMIKDQNKM-----INVFASFGGLI 122
Query: 460 MRLQGDANNLHGFEVDQHMYLLMKK 534
++L G + L F DQ +YLLM+K
Sbjct: 123 LKLSGKSEELDKFADDQRVYLLMRK 147
>UniRef50_A7ET20 Cluster: UDP-glucose 4-epimerase Gal10; n=12;
Pezizomycotina|Rep: UDP-glucose 4-epimerase Gal10 -
Sclerotinia sclerotiorum 1980
Length = 151
Score = 95.5 bits (227), Expect = 9e-19
Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKFDRVSRLHCESE-SFKMDLILDINSWIYPMQLGEKFRLVLATT 282
LF++ F V ++D KK+ RV R+ S + ++LDIN+ +YP+ +G+ R+VLAT+
Sbjct: 9 LFDEHFTVNELDH--KKYVRVGRIKATSTVDHSVSMLLDINTELYPLAVGDNIRVVLATS 66
Query: 283 LRENGYPDGGE-WNP-----LETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVS 444
L +G D G+ W L E AD F+YV GK+Y+ E E + + AY+S
Sbjct: 67 LNLDGTKDDGKGWRDANRMGLGGEATLADMFDYVCHGKIYKFED----QENSDLIKAYIS 122
Query: 445 FGGLLMRLQGDANNLHGFEVDQHMYLLMKK 534
FGGLLM L+G L VD ++YLL+KK
Sbjct: 123 FGGLLMGLEGPYKKLTPLRVD-YVYLLIKK 151
>UniRef50_A2D8U6 Cluster: RNA polymerase Rpb8 family protein; n=1;
Trichomonas vaginalis G3|Rep: RNA polymerase Rpb8 family
protein - Trichomonas vaginalis G3
Length = 146
Score = 93.5 bits (222), Expect = 4e-18
Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Frame = +1
Query: 121 FNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTLRENGY 300
F +DP+GK+FD VSR+ ++ +L+LD N +IY ++ + F+L ++T L +
Sbjct: 8 FRCTAVDPDGKQFDDVSRIKATTDEGDYELVLDYNCFIYEIKQDQLFQLNISTQLHSDEA 67
Query: 301 PDGGE-WNPLETEGNR-ADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQG 474
E W+P E + A S+EY+M GKVY E +R YVS+GGLLM L G
Sbjct: 68 SRAEEHWHPSIVENSTLAASYEYIMHGKVYNYE----EQPETNRATVYVSYGGLLMSLTG 123
Query: 475 DANNLHGFEVDQHMYLLMKK 534
D N + G + + +YLL+ +
Sbjct: 124 DRNTIAGIQRGKEVYLLISR 143
>UniRef50_Q4P603 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 161
Score = 89.8 bits (213), Expect = 4e-17
Identities = 63/162 (38%), Positives = 90/162 (55%), Gaps = 20/162 (12%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTL 285
LF+ F V +DP+GKKFDRVSR+ S S M L +DI + I+P+ G++ LA+TL
Sbjct: 6 LFDTQFVVSQIDPDGKKFDRVSRIIATSPSLDMTLSIDIATDIWPVTEGQQLTFQLASTL 65
Query: 286 RE---NGYPDG--GE-------------WNPLETEGNR--ADSFEYVMSGKVYRIEGDEA 405
++ + PDG GE W L+ GN AD F+YVM GK+YR DE
Sbjct: 66 KKETSSAKPDGVDGETQDAAAQAAERDAWR-LDQPGNGGIADDFDYVMYGKIYRY--DE- 121
Query: 406 AMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMK 531
+ A + Y SFGGL+M L G+ ++ + ++YLLM+
Sbjct: 122 --KVADEVTVYGSFGGLMMALTGNFRHMSNITIGSNVYLLMR 161
>UniRef50_Q5CHU5 Cluster: RNA polymerase subunit 8c; n=2;
Cryptosporidium|Rep: RNA polymerase subunit 8c -
Cryptosporidium hominis
Length = 144
Score = 87.4 bits (207), Expect = 2e-16
Identities = 51/143 (35%), Positives = 80/143 (55%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTL 285
LFED F + +D KFDR+ R+ S F DLILDIN+ ++P++ E + L++ +
Sbjct: 7 LFEDRFVINSVD--SGKFDRIGRIRGRSVGFDADLILDINNELFPVREKESLYIGLSSQV 64
Query: 286 RENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMR 465
N P+ W+ + D ++YVM GK+YR+E + + R + Y SFGGLLM
Sbjct: 65 SVN--PNDIVWDNSGPQ-TLMDQYDYVMYGKIYRVEEKQ-----SDRRSLYASFGGLLMS 116
Query: 466 LQGDANNLHGFEVDQHMYLLMKK 534
L D N + F +D +Y L+++
Sbjct: 117 LTADKNLVGDFSLDMRLYCLVRR 139
>UniRef50_Q5KBG4 Cluster: DNA-directed RNA polymerases i, ii, and
iii 17.1 kDa polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerases i, ii, and
iii 17.1 kDa polypeptide, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 157
Score = 84.2 bits (199), Expect = 2e-15
Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 18/164 (10%)
Frame = +1
Query: 97 AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLA 276
+ ++F+D F V +D +GKKFDRVSR+ S S M L LDI + +YP++ E F L LA
Sbjct: 5 SNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPLEQSETFTLTLA 64
Query: 277 TTL----------RENG--YPDGGEWNPLETEGNR------ADSFEYVMSGKVYRIEGDE 402
+L R +G +G E ++ E R A+ ++YVM GKV +
Sbjct: 65 RSLVPSELETLDSRADGDEGEEGSEVRRVKRELWRSHEQGLAEDYDYVMYGKVGK----- 119
Query: 403 AAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKK 534
AY SFGGLLM L+G +L G V +++YLLM+K
Sbjct: 120 ------GGSTAYFSFGGLLMALRGSYRHLAGVVVGENVYLLMRK 157
>UniRef50_A2XP07 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 247
Score = 80.6 bits (190), Expect = 3e-14
Identities = 37/71 (52%), Positives = 49/71 (69%)
Frame = +1
Query: 94 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
MA LFEDIF V +DP+GKKFDRVSR+ S+ F M + LD+ + +YPM G++F +VL
Sbjct: 68 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127
Query: 274 ATTLRENGYPD 306
TL +G PD
Sbjct: 128 VPTLNLDGTPD 138
Score = 67.3 bits (157), Expect = 3e-10
Identities = 30/65 (46%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Frame = +1
Query: 346 ADSFEYVMSGKVYRIEGD-EAAMEPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYL 522
AD +EYVM GK+Y+I D + + + A ++ Y SFGGLL+ L+GD ++ FE+DQ ++L
Sbjct: 183 ADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQRLFL 242
Query: 523 LMKKL 537
LM+K+
Sbjct: 243 LMRKV 247
>UniRef50_Q92399 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC3; n=1; Schizosaccharomyces pombe|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC3 - Schizosaccharomyces pombe (Fission yeast)
Length = 125
Score = 79.0 bits (186), Expect = 8e-14
Identities = 54/144 (37%), Positives = 81/144 (56%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
VL ++IF V +D + K+ RVSR+ S M+L LDINS IYP++ F L + +
Sbjct: 5 VLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSN 62
Query: 283 LRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLM 462
L PD ++ +Y+M GKVYR+E EA E +++ YVSFGGLLM
Sbjct: 63 LNS---PD------------LKEAADYIMYGKVYRVE--EAKDE---KVSVYVSFGGLLM 102
Query: 463 RLQGDANNLHGFEVDQHMYLLMKK 534
++G L+ +D H+YLL+++
Sbjct: 103 AIEGSHRKLYRLSLD-HVYLLLRR 125
>UniRef50_P20436 Cluster: DNA-directed RNA polymerases I, II, and
III subunit RPABC3; n=11; Saccharomycetales|Rep:
DNA-directed RNA polymerases I, II, and III subunit
RPABC3 - Saccharomyces cerevisiae (Baker's yeast)
Length = 146
Score = 77.0 bits (181), Expect = 3e-13
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 8/155 (5%)
Frame = +1
Query: 94 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESF-KMDLILDINSWIYPMQLGEKFRLV 270
M+ LF+DIF V ++DP ++++V R+ S + + L LDIN ++P+ + +
Sbjct: 1 MSNTLFDDIFQVSEVDPG--RYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVT 58
Query: 271 LATTLRENGYPDGGE-----WNPLETEGNR--ADSFEYVMSGKVYRIEGDEAAMEPASRL 429
+A++L P W P + G+R AD ++YVM G Y+ E E + + +
Sbjct: 59 IASSLNLEDTPANDSSATRSWRPPQA-GDRSLADDYDYVMYGTAYKFE--EVSKD---LI 112
Query: 430 AAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKK 534
A Y SFGGLLMRL+G+ NL+ + ++ YLL+++
Sbjct: 113 AVYYSFGGLLMRLEGNYRNLNNLK-QENAYLLIRR 146
>UniRef50_Q5BGY8 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 128
Score = 76.2 bits (179), Expect = 6e-13
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
+LFED F V ++ E K+DRVSRL C S + LDINS +YP GE + LA+T
Sbjct: 5 LLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMALAST 62
Query: 283 LRENGYPDGGE--WNPLET-EGNRADSFEYVMSGKVYRIEGDEAAMEPAS 423
L +G DG + W + E A+ ++YV GKVYR E EA+ P +
Sbjct: 63 LSLDGKEDGAKTGWREVGMGEQTLANDYDYVCHGKVYRFE--EASDSPGN 110
>UniRef50_A7AQQ3 Cluster: RNA polymerase subunit 8c, putative; n=3;
Piroplasmida|Rep: RNA polymerase subunit 8c, putative -
Babesia bovis
Length = 145
Score = 75.4 bits (177), Expect = 1e-12
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Frame = +1
Query: 97 AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLA 276
A +FED F V+ +D KF+RVSR+ +S F +L+LDINS I+P+ + +++
Sbjct: 4 ATCVFEDRFVVRSID--NSKFERVSRITAKSTGFDAELLLDINSDIFPVTVKSMLHILMT 61
Query: 277 TTLRENGYPDGGEWNPLETEG--NRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFG 450
L P G + N + + +EY M GK+++ E + + E + Y SFG
Sbjct: 62 NNL----LPSGSDVNLSDYSDLPSLMRDYEYAMYGKIFKFE--DVSSETRT---IYASFG 112
Query: 451 GLLMRLQGDANNLHGFEVDQHMYLLMKKLA 540
GLLM L D + ++D +YL+ ++++
Sbjct: 113 GLLMSLTADKQVIADLDLDMRIYLMARRIS 142
>UniRef50_UPI00006CF85E Cluster: RNA polymerase Rpb8 family protein;
n=1; Tetrahymena thermophila SB210|Rep: RNA polymerase
Rpb8 family protein - Tetrahymena thermophila SB210
Length = 144
Score = 74.9 bits (176), Expect = 1e-12
Identities = 45/144 (31%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
+L ED F ++++ E +KF +V R+ S++ + + +DI++ +Y M+ G ++ +++ ++
Sbjct: 6 ILLEDRFKLEEIKKE-EKFSKVERVVLVSDN-NIKIEIDIHTDLYSMKKGNQYWVMITSS 63
Query: 283 LRENGYPDGGEWNPLETEGNRA-DSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLL 459
L N D G + E + D FEYVM GK+Y + D A ++ + SFGGLL
Sbjct: 64 LG-NFQEDKGIFVSEEFDRESIKDKFEYVMHGKIYNMNSDNKA----KTVSIFASFGGLL 118
Query: 460 MRLQGDANNLHGFEVDQHMYLLMK 531
M++ G +L F VD +Y+L++
Sbjct: 119 MKVSGKDEDLKNFNVDSRIYILIR 142
>UniRef50_A6QU50 Cluster: DNA-directed RNA polymerases i; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerases i - Ajellomyces capsulatus NAm1
Length = 129
Score = 74.1 bits (174), Expect = 2e-12
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
VLFED F + ++ + K+DRV+R++C S LD+N+ +YP+ +GE L LA+T
Sbjct: 5 VLFEDTFTITAINAQ--KYDRVARINCTSSDNLTTFTLDVNTELYPVAMGESLSLALAST 62
Query: 283 LRENGYPDG----GEWNPLET-EGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 447
L +G D G W + + A+ ++YV GKVYR E A ++ +VSF
Sbjct: 63 LALDGKDDSAGGRGAWRDVGMGDQTLANDYDYVCHGKVYRFEEGNT----AENMSVFVSF 118
Query: 448 GGLLMRLQG 474
G L G
Sbjct: 119 GRSFALLGG 127
>UniRef50_Q4Q8I8 Cluster: RNA polymerase B subunit RPB8, putative;
n=6; Trypanosomatidae|Rep: RNA polymerase B subunit
RPB8, putative - Leishmania major
Length = 149
Score = 71.3 bits (167), Expect = 2e-11
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
V+ ED F V ++ EG + RVSR+ C ++ + + DINS +P+ ++ +VLA +
Sbjct: 6 VILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITTDINSEEFPVSTNDRLTIVLANS 65
Query: 283 LRENGYPDGGEW--NPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGL 456
L E G G ++ + + R + +Y M G+VY E E +E + ++S GGL
Sbjct: 66 L-ELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVYGHEVVENGLE----VNVHISCGGL 120
Query: 457 LMRLQGDANNLHGFEVDQHMYLLMKKL 537
L+ + G L + +Y+L+K++
Sbjct: 121 LVNIVGKPQGLRDVHYNSDVYILIKRV 147
>UniRef50_Q7RN09 Cluster: DNA-directed RNA polymerases i, ii, and
iii 17.1 kDa polypeptide; n=6; Plasmodium|Rep:
DNA-directed RNA polymerases i, ii, and iii 17.1 kDa
polypeptide - Plasmodium yoelii yoelii
Length = 160
Score = 70.9 bits (166), Expect = 2e-11
Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 15/162 (9%)
Frame = +1
Query: 97 AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQ---------L 249
+ +LFED F + ++D KF++VSR+ +S + +LILD++S ++ ++
Sbjct: 3 SNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKVAQIIKK 60
Query: 250 GEKFRL----VLATTLREN--GYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAM 411
EK +L + L++N G D W +T+ ++ EY+MSG++++ E E +
Sbjct: 61 REKKKLNHHHAIYLALQDNFMGKNDEKTWE--QTDNKSLNNIEYIMSGRIFKFE--ELSS 116
Query: 412 EPASRLAAYVSFGGLLMRLQGDANNLHGFEVDQHMYLLMKKL 537
E R Y S+GGL+M L D + E+D +YLL K +
Sbjct: 117 E---RRTVYASYGGLMMALTADKQFIGDLEIDMKIYLLAKNV 155
>UniRef50_Q40944 Cluster: Putative RNA polymerase II subunit; n=1;
Bigelowiella natans|Rep: Putative RNA polymerase II
subunit - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 147
Score = 68.9 bits (161), Expect = 9e-11
Identities = 44/141 (31%), Positives = 72/141 (51%)
Frame = +1
Query: 115 DIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTLREN 294
DI + DP+GK +++VSR+ +S M+L DINS ++P+ +G+ L + T+ +
Sbjct: 12 DIIKILSKDPDGKLYEKVSRIIAQSYYLNMELWFDINSHLFPIYVGDSLNLSI-YTISDE 70
Query: 295 GYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQG 474
+ + N D +EY M GKV+ I E + L Y SFGGLL++L+
Sbjct: 71 SFNSTIKDNQF---SYLVDKYEYFMIGKVFNII-TSIERETSFNL-IYASFGGLLLKLKV 125
Query: 475 DANNLHGFEVDQHMYLLMKKL 537
L F + H+ L + +L
Sbjct: 126 KKKYLKSFLPNSHLCLGLNRL 146
>UniRef50_UPI00004983D0 Cluster: RNA polymerase subunit Rpb8; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase
subunit Rpb8 - Entamoeba histolytica HM-1:IMSS
Length = 143
Score = 68.5 bits (160), Expect = 1e-10
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Frame = +1
Query: 121 FNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTLRENGY 300
F V D GK F+ VSR E E + + +DIN+ ++P++ ++ +L L TL +G
Sbjct: 8 FKVIAKDIGGKIFEGVSRFKLEGED--LTVFVDINTDLFPLEEHDRIKLDLTKTLNRDGS 65
Query: 301 PDGGEWNPLETEGN--RADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLMRLQG 474
P + G + D F+YVMSG V++ ++ L+ SFGGLL+ L G
Sbjct: 66 PMDIHQGYSDNFGKNTKMDDFDYVMSGMVFKFVENKND----DNLSVIASFGGLLLMLYG 121
Query: 475 DANNLHGFEVDQHMYLLMKK 534
L + + +YLL++K
Sbjct: 122 KPEKLSAYNMKDQVYLLIRK 141
>UniRef50_Q2H0W3 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 116
Score = 66.1 bits (154), Expect = 6e-10
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Frame = +1
Query: 85 NLIMAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFR 264
N+ LFE+ F ++ + K+DRV R++C+SE + + LDIN+ ++P + E+
Sbjct: 3 NIASDAQLFEEHFRIERLGDN--KYDRVDRIYCKSEDKSITMTLDINNELFPCKPDEELH 60
Query: 265 LVLATTLRENGYPDGGE-WNPLETEG----NRADSFEYVMSGKVYRIEGDE 402
+ LAT+L +G D W + G AD F+YV GK+Y+ E E
Sbjct: 61 VALATSLHYDGSKDDERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAE 111
>UniRef50_UPI00006CB425 Cluster: RNA polymerase Rpb8 family protein;
n=1; Tetrahymena thermophila SB210|Rep: RNA polymerase
Rpb8 family protein - Tetrahymena thermophila SB210
Length = 130
Score = 45.6 bits (103), Expect = 0.001
Identities = 34/146 (23%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
+L +D F ++ E K+ R R+ +E+ +++ DIN ++PM+ +K++++L +
Sbjct: 9 ILVDDTFIASNIIKE-PKYVRTWRVILNNETLSIEI--DINFDLFPMEQDKKYQVILTQS 65
Query: 283 LRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLM 462
P+ + SF Y M GK+++I+ +E + Y+S+GGL+M
Sbjct: 66 F----LPEYKK------------SFSYAMYGKIFKID-----LEQDQYQSIYISYGGLVM 104
Query: 463 RLQGDANNL-HGFEVDQHMYLLMKKL 537
+++G N++ + + Y+L++++
Sbjct: 105 KMRGKLNDMSQSIKNETRCYILLRQI 130
>UniRef50_Q7QYG2 Cluster: GLP_162_7496_7044; n=2; Giardia
intestinalis|Rep: GLP_162_7496_7044 - Giardia lamblia
ATCC 50803
Length = 150
Score = 45.2 bits (102), Expect = 0.001
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKF-DRVSRLHCES-ESFKMDLILDINSWIYPMQLGEKFRLVLAT 279
L+ F++ DPE K+ D + R+ ES + + L LD N +YP +L + R +
Sbjct: 3 LYSSRFSIASFDPECVKYYDNIGRVLLESTDDPDVFLTLDYNLELYP-KLNKNARSLEVQ 61
Query: 280 TLRENGYPD------GGEWNPLETE--GNRADSFEYVMSGKVY--RIEGDEAAMEPASRL 429
L Y D ++P +E + +Y M G V+ R GD+ M
Sbjct: 62 ILSSISYQDFNVSADSPNYDPKLSEILHDAYPDLDYAMHGTVFEFRAVGDKVDM------ 115
Query: 430 AAYVSFGGLLMRLQGDANNLHGFEVDQHMYLL 525
++SFGGL+ +LQ A L F+ +YLL
Sbjct: 116 --FISFGGLIAKLQAPAFRLERFKFGMKLYLL 145
>UniRef50_Q72G75 Cluster: Cbs domain proteins; n=1; Thermus
thermophilus HB27|Rep: Cbs domain proteins - Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Length = 315
Score = 37.9 bits (84), Expect = 0.18
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +1
Query: 286 RENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAME-PASRLAAYVSFGGLLM 462
+ENG+P G L+T G R F + G+VYR GDE A+ P R A + LL
Sbjct: 153 KENGHPFGDR--VLKTLGQRLKGFAQDLGGEVYRYGGDEFALVFPHPRQALLPALPSLLS 210
Query: 463 RLQGDANNLHGFEV 504
L+ + + GF V
Sbjct: 211 PLEVEGKRV-GFSV 223
>UniRef50_A7IBU3 Cluster: Putative uncharacterized protein; n=1;
Xanthobacter autotrophicus Py2|Rep: Putative
uncharacterized protein - Xanthobacter sp. (strain Py2)
Length = 703
Score = 36.3 bits (80), Expect = 0.56
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = -1
Query: 456 EATERDVGR*SGCRLHRCLVTFYPVYFSGHDIFETICSISFGLQRVPFSAVRVSVFPQRR 277
+ ER VG +G R+HRCL + F F++I S S ++ V SA V ++ +
Sbjct: 334 DLVERGVGVHNG-RMHRCLSQLQVLLFEHEKGFDSIVSTSSIIEGVNTSAQNVIIWKSKL 392
Query: 276 GQN*TKLF 253
GQN K F
Sbjct: 393 GQNNLKDF 400
>UniRef50_Q8SRJ5 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 120
Score = 35.5 bits (78), Expect = 0.98
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTL 285
+ D F V D+D EGK + VSR + +S + +D+ LD N+ + +Q G + + +
Sbjct: 3 ILADNFKVSDIDREGKLYANVSRAYMKSPT--VDIALDYNTVLCRLQTGHALEVRIFRGI 60
Query: 286 REN---GYPDGGEWNPLETEGNRA 348
E+ Y G +E +G RA
Sbjct: 61 SEDIECHYLVCGRVYSVEYKGGRA 84
>UniRef50_Q03213 Cluster: High-osmolarity-induced transcription
protein 1; n=2; Saccharomyces cerevisiae|Rep:
High-osmolarity-induced transcription protein 1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 719
Score = 35.5 bits (78), Expect = 0.98
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Frame = -2
Query: 506 STSKPCKLFASPCSRIRRPPNET*AANLDAGSIAASSP-SILY---------TFPDMTYS 357
ST KP KL + R RR A+ + + AA P S L T + T S
Sbjct: 368 STDKPFKLNPNGIKRRRRNTQSNNNASTNDHASAAQKPISALSPLTNSHNSTTSMNYTNS 427
Query: 356 KLSARFPSVSRGFHSPPSGYPF------SLNVVAKTKRNFSPNCIGYIQELMSNIKSILN 195
+ + S S FH S F SL +A +F PN I +++N + L+
Sbjct: 428 SIHSGVTSASNSFHDLNSLNNFGTTTALSLPSLALDNASFPPNQ-NVIPPIINNTQQPLS 486
Query: 194 DSDSQCNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVNLFY*NNINNEQYEKE 27
S T S LPSG + + + + + + YP + +N++++ Y+++
Sbjct: 487 FSQLINQDSTTSELLPSGKSGVNTNIVNRNRASTLPSYPKPMTVKSNVDDDGYQED 542
>UniRef50_Q8MR48 Cluster: GH21870p; n=3; melanogaster subgroup|Rep:
GH21870p - Drosophila melanogaster (Fruit fly)
Length = 334
Score = 33.5 bits (73), Expect = 4.0
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 253 EKFRLVLATTLRENGYPD---GGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPAS 423
E F+ V+ + G+ D GG N L++EG F+Y+ SGK+ R GD +EP
Sbjct: 81 EDFKAVVHYVTSQVGFDDFWFGG--NDLQSEGR----FKYISSGKLVRYMGDSNIVEPTQ 134
Query: 424 R 426
R
Sbjct: 135 R 135
>UniRef50_A1TSG8 Cluster: Putative uncharacterized protein; n=1;
Acidovorax avenae subsp. citrulli AAC00-1|Rep: Putative
uncharacterized protein - Acidovorax avenae subsp.
citrulli (strain AAC00-1)
Length = 109
Score = 33.1 bits (72), Expect = 5.2
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3
Query: 532 SSSTNTCADQLRSRASCSRPLAAASGGHRTRRRPLIWMPAPSLPR 398
++S T A RS+ SC+R LA+ASG R RR P P+ P+
Sbjct: 13 AASLRTAARNCRSKMSCTRALASASGPAR-RRYPRARRLGPATPQ 56
>UniRef50_Q0BPE1 Cluster: Putative uncharacterized protein; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Putative
uncharacterized protein - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 205
Score = 32.7 bits (71), Expect = 6.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 466 AASGGHRTRRRPLIWMPAPSLPRHL 392
+ASG +R RRP+IWM A S+ HL
Sbjct: 10 SASGYYRQSRRPVIWMSAASIACHL 34
>UniRef50_A0Z9Q6 Cluster: Putative uncharacterized protein; n=1;
Nodularia spumigena CCY 9414|Rep: Putative
uncharacterized protein - Nodularia spumigena CCY 9414
Length = 1067
Score = 32.7 bits (71), Expect = 6.9
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = -2
Query: 440 T*AANLDAGSIAASSPSILYTF-PDMTYSKLSARFPSVSRGFHSPPSGYPFSLNVVAKTK 264
T A + A I+ +++YT PD Y+ + F +V+ F+ PS P V +
Sbjct: 83 TVTAPIFADGISEGQQTVVYTLQPDAAYT-VDPSFSAVTVNFYDDPSQVPAPPPVNDQPV 141
Query: 263 RNFSPNCIGYIQELMSNIKS--ILNDSDSQCNRLTLSNFLPSGSMSLTLKMSSNST 102
Q+L+ N+ + + ND+D+Q + LT + + SLTL + + T
Sbjct: 142 AVNDSYTTNAGQQLVVNVANGVLSNDTDAQTDPLTATVVQAPSNGSLTLDANGSFT 197
>UniRef50_A3BYC8 Cluster: Putative uncharacterized protein; n=4;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 176
Score = 32.7 bits (71), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 374 PDMTYSKLSARFPSVSRGFHSPPSGYPFSLNVVA 273
P+ +Y L RFP V GF +PP + S +VA
Sbjct: 142 PNQSYDNLLLRFPCVGEGFPTPPKEHNLSAALVA 175
>UniRef50_Q4WG07 Cluster: Riboflavin biosynthesis protein Rib7,
putative; n=7; Pezizomycotina|Rep: Riboflavin
biosynthesis protein Rib7, putative - Aspergillus
fumigatus (Sartorya fumigata)
Length = 280
Score = 32.7 bits (71), Expect = 6.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 380 TFPDMTYSKLSARFPSVSRGFHSPPSGYPFS 288
TFPD + + L P S+ F SP SG PF+
Sbjct: 11 TFPDSSRAFLEPHLPPNSKNFQSPDSGLPFT 41
>UniRef50_A0YI84 Cluster: Putative uncharacterized protein; n=1;
Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
protein - Lyngbya sp. PCC 8106
Length = 370
Score = 32.3 bits (70), Expect = 9.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 413 SIAASSPSILYTFPDMTYSKLSARFPSVSRGFHSPPSGYP 294
+I A + S LYT + + +S FP+ +RG SP G+P
Sbjct: 74 NIQAQAGSALYTEKPVKSNHVSGEFPTAARGESSPLGGFP 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,573,193
Number of Sequences: 1657284
Number of extensions: 13472266
Number of successful extensions: 38816
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38763
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -