Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_P07
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub... 79 5e-16
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 30 0.30
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.8
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.7
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.9
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 25 8.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.6
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 8.6
>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 125
Score = 79.0 bits (186), Expect = 5e-16
Identities = 54/144 (37%), Positives = 81/144 (56%)
Frame = +1
Query: 103 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATT 282
VL ++IF V +D + K+ RVSR+ S M+L LDINS IYP++ F L + +
Sbjct: 5 VLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSN 62
Query: 283 LRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGGLLM 462
L PD ++ +Y+M GKVYR+E EA E +++ YVSFGGLLM
Sbjct: 63 LNS---PD------------LKEAADYIMYGKVYRVE--EAKDE---KVSVYVSFGGLLM 102
Query: 463 RLQGDANNLHGFEVDQHMYLLMKK 534
++G L+ +D H+YLL+++
Sbjct: 103 AIEGSHRKLYRLSLD-HVYLLLRR 125
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 29.9 bits (64), Expect = 0.30
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = -2
Query: 413 SIAASSPSILYTFPDMTYSKLSARFPSVSRGFHSPPSGYPF-SLNVVAKTKRNFSPNCIG 237
S+++ P ++ P++ + +V + PPSGYP S V+ +
Sbjct: 233 SLSSGYPQQHFSQPEL--QNRNVHLETVPESYPVPPSGYPLTSSTCVSSISQPIQSTDCQ 290
Query: 236 YIQELMSNIKSI-LNDSDSQCNRLTLSNFLPSGSMSLTLKMSS 111
QE +SN K + ND D + +++ LP +++ L+M++
Sbjct: 291 KAQENLSNNKQMSSNDQDIDPFKQAITD-LPPSFVNIVLEMNA 332
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 127 VKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLG 252
++ +D GK SRL E ++ +D+ +NS +Y + LG
Sbjct: 720 LETLDDYGKLLAHFSRLAPEFQTGMLDMFRTLNSRVYQLILG 761
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = -2
Query: 323 GFHSPPSGYPFSLNVVAKTKRNFSPNCIGYIQELMSNIKSILNDSDSQCNRLTLSNFLPS 144
G+++PP GYP + + S + G + ++ + +D + +L N + S
Sbjct: 268 GYNTPPFGYPPTTSSALPNASGSSSSFFGLPTAVSASAGTSFSDISPAAPKASLENNIAS 327
Query: 143 GSMSL 129
+ SL
Sbjct: 328 NASSL 332
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 191 SDSQCNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVN 72
S+ Q + +L ++ PSGS+ T+K S+ + + F+ N
Sbjct: 248 SEPQDGQQSLLSWKPSGSVLATIKSDSSDNSSKVIFFERN 287
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 184 ESESFKMDLILDINSWIYPMQLGEKFRLVLATTLREN 294
E +SF + L++ + + P L + RLVL+ L EN
Sbjct: 417 EEDSFFIQLLMAVFKLLKPKLLVDDSRLVLSALLFEN 453
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 8.6
Identities = 33/119 (27%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Frame = -2
Query: 446 NET*AANLDAGSIAASSPSILYTFPDMTYSKLSARFPSVSRGFHSPPSGYPFSLNVVAKT 267
+ T A+N S ASS T T S LS+ S S S S S T
Sbjct: 182 SSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 241
Query: 266 KRNFSPNCIGYIQELMSNIKSILNDSD--SQCNRLTLSNFLPSGSMSLTLKMSSNSTPA 96
+ S SN + + S + S+ LPS + S T S+NST A
Sbjct: 242 SSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTA 300
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 151 KKFDRVSRLHCESESFKMDLILDIN 225
KK R++RL ESE F+ + DIN
Sbjct: 71 KKTVRLNRLQRESEQFENSALKDIN 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,023
Number of Sequences: 5004
Number of extensions: 55679
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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