Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_P07
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0660 - 35349264-35349375,35349914-35350017,35350211-353503... 136 2e-32
06_03_1257 - 28790660-28790785,28791126-28791283,28791528-287916... 103 1e-22
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 30 1.6
05_02_0067 + 6298232-6298294,6298532-6299068 29 2.9
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 2.9
11_04_0167 + 14382976-14385244,14389373-14389842 29 3.8
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 29 3.8
11_01_0124 + 975921-976589,1010229-1011290 28 5.0
05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589 28 5.0
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 28 5.0
10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371 28 6.6
04_04_1662 - 35149985-35150290,35150548-35150929,35150953-351510... 28 6.6
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059... 28 6.6
11_06_0754 - 26935647-26937780,26940890-26941827 27 8.7
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 8.7
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 27 8.7
07_03_0314 + 16669072-16669553,16669936-16671106,16671394-166720... 27 8.7
07_01_1045 + 9131301-9131483,9131652-9131717,9132433-9132513,913... 27 8.7
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 27 8.7
>03_06_0660 -
35349264-35349375,35349914-35350017,35350211-35350368,
35350899-35350986,35352927-35353025,35353377-35353472,
35353591-35353628,35357960-35358285,35358600-35358796
Length = 405
Score = 136 bits (328), Expect = 2e-32
Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Frame = +1
Query: 94 MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
MA LFEDIF V +DP+GKKFDRVSR+ S+ F M + LD+ + +YPM G++F +VL
Sbjct: 258 MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 317
Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGD-EAAMEPASRLAAYVSFG 450
TL +G PD + + AD +EYVM GK+Y+I D + + + A ++ Y SFG
Sbjct: 318 VPTLNLDGTPDSAFFTQAGRK-TLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFG 376
Query: 451 GLLMRLQGDANNLHGFEVDQHMYLLMKKL 537
GLL+ L+GD ++ FE+DQ ++LLM+K+
Sbjct: 377 GLLVMLKGDPSSAANFELDQRLFLLMRKV 405
>06_03_1257 -
28790660-28790785,28791126-28791283,28791528-28791604,
28791825-28791955
Length = 163
Score = 103 bits (247), Expect = 1e-22
Identities = 51/114 (44%), Positives = 75/114 (65%)
Frame = +1
Query: 106 LFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVLATTL 285
LFEDIF V +DP+GKKFDRVSR+ SE F M + LD+ + +YPM+ G++F +VLA TL
Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109
Query: 286 RENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSF 447
+G PD G + + AD F+YVM GK+Y+I D ++ + A+++ + F
Sbjct: 110 NLDGTPDTGFYTQAGRK-TLADKFDYVMHGKLYKISEDSSSGQ-ATKVYGFYEF 161
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 29.9 bits (64), Expect = 1.6
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Frame = -2
Query: 449 PNET*AANLDAGSIAASSP---SILYTFPDMTYSKLSARFPSVSRGFHSPPSGYPFSLNV 279
P + ANL + S+AA+SP +++ T P + ++ ++A S S SPP P +L
Sbjct: 205 PRNSITANLASSSVAAASPPPRNLVSTTP-VPHNSIAANLASSSVAAASPP---PRNLVS 260
Query: 278 VAKTKRN-FSPNCIGYIQELMSNIKSILNDSDSQCNRLTLSNFLPSGSMSLTLKMSSNST 102
RN + N S +++ S ++ ++ +++ L S S+S T S +
Sbjct: 261 TTPVPRNPIAANVASSSVAAASPPRNLA--STTKVSQNSIAANLASSSVSATSTASRGAA 318
Query: 101 PAMIKFYPVN 72
PA YPV+
Sbjct: 319 PAC---YPVD 325
>05_02_0067 + 6298232-6298294,6298532-6299068
Length = 199
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 556 FNRTKTLISSSTNTCADQLRSRASCSRPLA 467
FNR T +S+ TC DQLR+ + +R L+
Sbjct: 163 FNRRTTASTSAAATCHDQLRAAKTMARTLS 192
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 562 K*FNRTKTLISSSTNTCADQLRSRASCSRPLAAASGGHRTRRRPLI 425
K F+R + SS+ C Q++ SC + LA G + R I
Sbjct: 32 KIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLRFGSQVREEHAI 77
>11_04_0167 + 14382976-14385244,14389373-14389842
Length = 912
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 377 FPDMTYSKLSARFPS-VSRGFHSPPSGYPFSLNVVAKTKRNFSPNCI 240
FP YS +SA S +S F S G S+ V+ K NFS +CI
Sbjct: 541 FPTELYSHVSAANSSNISELFES--HGMQLSVEVLLKATNNFSEDCI 585
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = -2
Query: 482 FASPCSRIRRPPNET*AANLDAGSIAASSPSILYTFPDMTYSKLSARFPSVSRGFHSPPS 303
F+SP S + + +++ ++ + A+S S T ++ PSV+ G HS +
Sbjct: 36 FSSPPSTTSSSSSSSSSSSTNSPTATAASSSSTNTSGAAIVHPTTSSHPSVASGHHSAAN 95
Query: 302 GYPFSL---NVVAKTK 264
YP L VV K K
Sbjct: 96 SYPLVLKFEEVVYKVK 111
>11_01_0124 + 975921-976589,1010229-1011290
Length = 576
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 338 PSVSRGFHSPPSGYPFSLNVVAKTKRNFSPNCIGYIQELMSNIKSILNDSDSQCNRLTL 162
P V++ + PS N+V T N + G ++++MSN+K L +S + R T+
Sbjct: 15 PPVTKTGAANPSTEVNPSNIVPVTLDNLTAEQRGELEQMMSNVKDQLMNSFQETRRGTI 73
>05_07_0041 + 27261968-27262145,27262160-27262717,27262814-27263589
Length = 503
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 547 TKTLISSSTNTCADQLRSRASCSRPLAAASGGH 449
T +I+SST T A AS +R +AAA+G H
Sbjct: 105 TTGVIASSTRTLATTTGVIASSTRTIAAATGSH 137
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 514 CADQLRSRASCSRPLAAASGGHRTRRRPLIWMPAPSLPRHLLSCIL 377
CAD RS +AAA+GG++ L+ P+H++ C++
Sbjct: 777 CADDFRSDVVARASMAAAAGGNKL---VLVVDDVERAPQHVVECLV 819
>10_06_0094 - 10604597-10605028,10605673-10605738,10606249-10606371
Length = 206
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +3
Query: 105 AIRGH----FQRQRHGSGGQKVRQSQPIALRIGI-IQNGFNIGH*FLDI-SNAIRRKVSF 266
AIR H + ++R G G Q + P L + ++ + F+ SN ++ +V
Sbjct: 7 AIRAHRSASWPKERAGGGAQGSSEPPPAPLILAFHVKLPQKMSLPFIKTESNIVKNEVPQ 66
Query: 267 SFGHDVEGKRIP*RRRMEP 323
DV +R+P RRR+ P
Sbjct: 67 KCRPDVRHRRVPQRRRLRP 85
>04_04_1662 -
35149985-35150290,35150548-35150929,35150953-35151055,
35151186-35151252
Length = 285
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 306 RRRMEPSGDRRKSSR*FRICHVRKSIQDRR--*RGSDGAGIQISGLRLVRWPPDAAARGR 479
RRR E RR R R+C R+ +Q RR RG D +G + DAAA G
Sbjct: 100 RRRRERGHRRRHRRREQRVCCWRRLLQRRRRYRRGKDDIDAAAAGKDDI----DAAATGN 155
Query: 480 EQLA 491
++ A
Sbjct: 156 DEFA 159
>03_05_1024 +
29802831-29804208,29804710-29804759,29805569-29805954,
29807753-29807813,29807921-29807941
Length = 631
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 449 PNET*AANLDAGSIAASSPSILYTFPDMTYSKLSARFPSVSRGFHSPPSGYPFSLN 282
P +T + + + SSP+ + P T S S S S+GFH P SG F +
Sbjct: 10 PGQTTTFVISQPTSSKSSPAAIVVRPPATASSSSM---SHSQGFHQPSSGAVFGFS 62
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -2
Query: 245 CIGYIQELMSNIKSI-LNDSDSQC-NRLTLSNFLPSGSMSLTLKMSSNSTPAMIK 87
C+G+I + +SN+KS+ ++ + S C N S+ S +S S +S PA+++
Sbjct: 755 CLGFILQKLSNLKSVTMSTAGSSCVNSTDASSANVSVRISGDGLSSMSSPPALVE 809
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 402 GSDGAGIQISGLRLVRWPPDAAARGREQLARLRS 503
G G ++ LR VRWPP R L ++ S
Sbjct: 217 GGVGCRAFVASLRNVRWPPRGGVRHNRMLEKIAS 250
>07_03_1652 - 28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -2
Query: 386 LYTFPDMTYSKLSARFPSVSRGFHSPPSGYPFSLNVVAKTKRNFSPNCIGYIQELMSNIK 207
+Y + + S +S R PS RG+ + P GY ++ V +N + + E +SN++
Sbjct: 1013 VYEWQEPQCSNIS-RLPSSYRGYRTKPCGY--RVHTVDFEFKNLETKFVRFFAETISNVQ 1069
>07_03_0314 +
16669072-16669553,16669936-16671106,16671394-16672042,
16672165-16672187
Length = 774
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 200 LNDSDSQ-CNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVNLFY*NNINN 45
LN SD+Q C L + P +++ + + SN+ + +PVN+ Y + NN
Sbjct: 463 LNLSDNQLCGTLPRT---PEDMLAMVMDLGSNNLTGQVPRFPVNITYFDLSNN 512
>07_01_1045 +
9131301-9131483,9131652-9131717,9132433-9132513,
9133414-9133482,9133581-9133643,9133933-9133941,
9134259-9134341,9134415-9134517
Length = 218
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 469 AAASGGHRTRRRPLIWMPAP 410
AAA+ R RRRPL+ +P P
Sbjct: 46 AAAAAARRRRRRPLLQLPEP 65
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 399 RGSDGAGIQISGLRLVRWPPDAAAR 473
RG+D I +G+ +VRW P AAR
Sbjct: 207 RGADRTAINCNGIVVVRWLPIDAAR 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,002,274
Number of Sequences: 37544
Number of extensions: 399885
Number of successful extensions: 1309
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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