Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P07
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49199-1|CAA89060.1|  150|Homo sapiens RNA polymerase II subunit...   247   2e-65
BC000739-1|AAH00739.1|  150|Homo sapiens polymerase (RNA) II (DN...   247   2e-65
AJ252079-1|CAB92189.1|  150|Homo sapiens RPB8 protein.                247   2e-65
U37689-1|AAA91458.1|  150|Homo sapiens RNA polymerase II subunit...   245   1e-64
AK127492-1|BAC87004.1|  155|Homo sapiens protein ( Homo sapiens ...    31   2.4  

>Z49199-1|CAA89060.1|  150|Homo sapiens RNA polymerase II subunit
           hRPB17 protein.
          Length = 150

 Score =  247 bits (605), Expect = 2e-65
 Identities = 115/150 (76%), Positives = 132/150 (88%)
 Frame = +1

Query: 94  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGG 453
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GG
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG 120

Query: 454 LLMRLQGDANNLHGFEVDQHMYLLMKKLAF 543
           LLMRLQGDANNLHGFEVD  +YLLMKKLAF
Sbjct: 121 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF 150


>BC000739-1|AAH00739.1|  150|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide H protein.
          Length = 150

 Score =  247 bits (605), Expect = 2e-65
 Identities = 115/150 (76%), Positives = 132/150 (88%)
 Frame = +1

Query: 94  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGG 453
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GG
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG 120

Query: 454 LLMRLQGDANNLHGFEVDQHMYLLMKKLAF 543
           LLMRLQGDANNLHGFEVD  +YLLMKKLAF
Sbjct: 121 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF 150


>AJ252079-1|CAB92189.1|  150|Homo sapiens RPB8 protein.
          Length = 150

 Score =  247 bits (605), Expect = 2e-65
 Identities = 115/150 (76%), Positives = 132/150 (88%)
 Frame = +1

Query: 94  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
           MAG+LFEDIF+VKD+DPEGKKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGG 453
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GG
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG 120

Query: 454 LLMRLQGDANNLHGFEVDQHMYLLMKKLAF 543
           LLMRLQGDANNLHGFEVD  +YLLMKKLAF
Sbjct: 121 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF 150


>U37689-1|AAA91458.1|  150|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 150

 Score =  245 bits (599), Expect = 1e-64
 Identities = 114/150 (76%), Positives = 131/150 (87%)
 Frame = +1

Query: 94  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
           MAG+LFEDIF+VKD+DPE KKFDRVSRLHCESESFKMDLILD+N  IYP+ LG+KFRLV+
Sbjct: 1   MAGILFEDIFDVKDIDPEAKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGG 453
           A+TL E+G  D GE+NP +   +RAD FEYVM GKVYRIEGDE + E A+RL+AYVS+GG
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG 120

Query: 454 LLMRLQGDANNLHGFEVDQHMYLLMKKLAF 543
           LLMRLQGDANNLHGFEVD  +YLLMKKLAF
Sbjct: 121 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF 150


>AK127492-1|BAC87004.1|  155|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45584 fis, clone BRTHA3013860. ).
          Length = 155

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 25/66 (37%), Positives = 31/66 (46%)
 Frame = -2

Query: 503 TSKPCKLFASPCSRIRRPPNET*AANLDAGSIAASSPSILYTFPDMTYSKLSARFPSVSR 324
           T++P  L + PC R  R P+   A    AG+  ASS S     P M  S+     P  SR
Sbjct: 13  TAQP--LTSLPCPRKTRAPSRLEAVAAIAGTEPASS-SPTMPLPLMAPSEKLLSPPETSR 69

Query: 323 GFHSPP 306
            F SPP
Sbjct: 70  DFRSPP 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,452,033
Number of Sequences: 237096
Number of extensions: 1970430
Number of successful extensions: 4217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4210
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)