Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P07
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12964-16|AAA91226.1|  148|Caenorhabditis elegans Hypothetical p...   196   8e-51
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    31   0.84 
Z70750-4|CAA94739.2|  187|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    28   4.5  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   4.5  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U12964-16|AAA91226.1|  148|Caenorhabditis elegans Hypothetical
           protein F26F4.11 protein.
          Length = 148

 Score =  196 bits (479), Expect = 8e-51
 Identities = 93/150 (62%), Positives = 119/150 (79%)
 Frame = +1

Query: 94  MAGVLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMQLGEKFRLVL 273
           MAG++F+D+F VK +DP+GKKFDRVSR  C++ESFKM+LI+DINS IYP++  +K RLVL
Sbjct: 1   MAGIIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVL 60

Query: 274 ATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEGDEAAMEPASRLAAYVSFGG 453
           ATTLRE+G  D GE++P + E  R   +EYVM GKVYR+E D+   +   +LAAY SFGG
Sbjct: 61  ATTLREDGLADEGEYDP-KAEYPRIKQYEYVMYGKVYRLEDDDTGTD-GGKLAAYASFGG 118

Query: 454 LLMRLQGDANNLHGFEVDQHMYLLMKKLAF 543
           LLMRL+G+A NLHGFEVD ++YLLMKK  F
Sbjct: 119 LLMRLKGEAINLHGFEVDMNLYLLMKKTDF 148


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
 Frame = -2

Query: 392  SILYTFPDMTYSKLSARFPSVSRGFHSPPSGYPFSLNVVAKTKRNFSPNCIGYIQELMSN 213
            S ++   +  Y   S R   +S  F      Y    +V+A  ++N   N     + L  N
Sbjct: 1152 SCIFVQTNNYYDLSSCRNEKLSL-FSRSHQNYRDVASVLANVRQNVYENTTSGYRALNEN 1210

Query: 212  IKSILN-DSDSQCNRLTLSNFLPSGSMSLTLKMSSNSTPAMIKFYPVNLFY*NNINN 45
               +    S S      LSN    G  ++++ +SSN TP+ +  +  N F  ++ N+
Sbjct: 1211 FLVLFTLGSSSSSVSQELSNLQRKGIRTISIGLSSNMTPSALSSFAQNAFMVSDWNS 1267


>Z70750-4|CAA94739.2|  187|Caenorhabditis elegans Hypothetical
           protein C50F4.4 protein.
          Length = 187

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 97  AGVLFEDIFNVKDMDPEGKKFDRVSRLHCESES-FKMDLILDINSWIYPMQLGEKFRLVL 273
           A +   + + VK+ +     FD+      +SE+ FK+   L +N W Y +    K   V 
Sbjct: 23  ASIRILERYPVKEKNEVETLFDQEEMAGGDSEALFKLCHQL-LNVWKYAIYFQPKSE-VF 80

Query: 274 ATTLRENGYPD 306
             TL+ENGYPD
Sbjct: 81  IDTLQENGYPD 91


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 309 RRMEPSGDRRKSSR*FRICHVRKSIQDRR*RGSDGAGIQISG 434
           +R +   +RRK  R  RI   +KSI+  R R SD + I+ SG
Sbjct: 88  KRKKRESERRKKERSKRIARSKKSIKRDRERDSDSSRIKKSG 129


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -2

Query: 293 FSLNVVAKTKRNFSPNCIGYIQELMSNIKSILNDSDSQCNRLTLSNFLPSGSMSLTLKMS 114
           +SL V A+     S N    I  ++ +I       D +   +T+S  +P GS  +TLK  
Sbjct: 547 YSLKVTARDMGTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAV 606

Query: 113 SNSTPAMIKF 84
            N     I +
Sbjct: 607 DNDEDQKITY 616


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -2

Query: 293 FSLNVVAKTKRNFSPNCIGYIQELMSNIKSILNDSDSQCNRLTLSNFLPSGSMSLTLKMS 114
           +SL V A+     S N    I  ++ +I       D +   +T+S  +P GS  +TLK  
Sbjct: 547 YSLKVTARDMGTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAV 606

Query: 113 SNSTPAMIKF 84
            N     I +
Sbjct: 607 DNDEDQKITY 616


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
           protein FMI-1 protein.
          Length = 2596

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -2

Query: 293 FSLNVVAKTKRNFSPNCIGYIQELMSNIKSILNDSDSQCNRLTLSNFLPSGSMSLTLKMS 114
           +SL V A+     S N    I  ++ +I       D +   +T+S  +P GS  +TLK  
Sbjct: 547 YSLKVTARDMGTPSLNTSTTIAVVLKDINDNAPTFDKKEYNVTISEEMPRGSQIITLKAV 606

Query: 113 SNSTPAMIKF 84
            N     I +
Sbjct: 607 DNDEDQKITY 616


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 410 IAASSPSILYTFPDMTYSKLSARFPSVSRGF-HSPPSGYP 294
           I   +PS  Y      Y   ++ FP+ S GF H PPS  P
Sbjct: 72  IPNGAPSYQYNHAAPNYPTAASAFPAHSAGFSHQPPSFSP 111


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 77  QDKT*SWRVCYSRTFSTSKTWIRRAKSSTES 169
           QD+   W  CY +T    K  IR A S  E+
Sbjct: 322 QDEIAKWSNCYQKTLEKEKCAIRNATSKCEA 352


>AC006661-6|AAF39889.1|  312|Caenorhabditis elegans Hypothetical
           protein H20J04.3 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 217 DINSWIYPMQLGEKFRLVLATTLRENGYPDGGEWNPLETEGNRADSFEYVMSGKVYRIEG 396
           D  +WI    L E+     A +L+  G  DGG  + +   G+  D   YVM  +     G
Sbjct: 203 DDMAWI-DQHLDEQQLSRCARSLKRGGNNDGGNQDEMSDYGDYDDDINYVMMAEKRPNNG 261

Query: 397 D 399
           D
Sbjct: 262 D 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,914
Number of Sequences: 27780
Number of extensions: 316596
Number of successful extensions: 908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)