Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P07
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   0.44 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.4  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  IKLNHGGCAIRGHFQRQRHGS 143
           + +NH  CAIR   QR++ GS
Sbjct: 74  LSINHSACAIRCLAQRRKGGS 94


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 110 SRTFSTSKTWIRRAKSSTESADC 178
           S +  TS  W+    + T SADC
Sbjct: 24  SESAGTSCKWLSEGGNDTRSADC 46


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 217 DINSWIYPM 243
           DIN W+YP+
Sbjct: 292 DINQWVYPL 300



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 412 PSLPRHLLSCILF 374
           P  P + LSCILF
Sbjct: 201 PEFPLYQLSCILF 213


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 253 EKFRLVLATTLRE-NGYPDGGEWN 321
           EK +L     +++ NGY DGG +N
Sbjct: 57  EKVQLFSECLIKKFNGYDDGGNFN 80


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 470 CSRIRRPPNET*AANLDAGSIAASSPS 390
           CS  +RP ++  +   + GSI A S S
Sbjct: 881 CSDRKRPASQATSVKAEPGSIMAMSES 907


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 115 DIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDI 222
           DI + KD+DP       +  L  E++   + +ILD+
Sbjct: 83  DISDFKDVDPIFGTIKDLEDLTAEAKKQNLKVILDL 118


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 292 FPSTSWPKLNE 260
           FPS SW  +NE
Sbjct: 306 FPSNSWVAINE 316


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 292 FPSTSWPKLNE 260
           FPS SW  +NE
Sbjct: 274 FPSNSWVAINE 284


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 115 DIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILD 219
           DI N  D+DP         RL   ++S  + +ILD
Sbjct: 85  DISNFTDVDPVYGTLADFDRLVRRAKSLGLKVILD 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,523
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)