Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P04
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0019 + 27697918-27698609,27701107-27701372,27701778-277019...    29   3.9  
08_02_0080 + 12024505-12024942                                         29   5.2  
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549...    29   5.2  
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664...    28   9.1  
03_01_0030 + 290232-291020                                             28   9.1  

>11_08_0019 +
           27697918-27698609,27701107-27701372,27701778-27701948,
           27702187-27703166,27703723-27703804,27704148-27704170
          Length = 737

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 491 SRCLHSQDRVSLLPIRVGLHHITHIY*ISNTDNRWSDLCNLV*NDHGVPHLRMHCM 658
           S C H   +++   +  G    +H Y ++ T+N    LCN     HG P+L   C+
Sbjct: 264 SSCPHESGKMANPVVPYGACVSSHSYCVNVTNNGHGYLCNCSDGYHGNPYLPEGCI 319


>08_02_0080 + 12024505-12024942
          Length = 145

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 583 GQQMVRPMQSGVK-RPRSPSPTYALYAHRLHQPPMKHQPVYSDHKV 717
           G   + P QS VK      +PT  LY  R   PPM++  V   H++
Sbjct: 100 GSNSLSPKQSNVKVADIILAPTEGLYKARTKLPPMRYVMVEEGHRI 145


>03_02_0859 -
           11853928-11854138,11854225-11854683,11854760-11854991,
           11855064-11855187,11855276-11855960,11856429-11856735,
           11856832-11858188
          Length = 1124

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 598 GPSVVRVAYLVYVCYVVEAYPDWEEAHPVLAVEASRTSALACYPFAAFSLVAFHW 434
           G SV+ +A+++ V  V +AY DW   H     E  R +A+   P A        W
Sbjct: 93  GASVMPLAFVLTVTAVKDAYEDWRR-HRSDRAENGRLAAVLLSPGAGTHFAPTKW 146


>06_03_1455 +
           30264023-30264174,30265930-30266070,30266328-30266430,
           30266510-30266659,30267184-30267229,30267383-30267738
          Length = 315

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +1

Query: 628 RSPSPTYALYAHRLHQPPMKHQPVYSDHK----VXDGRMGR 738
           RSP P Y  Y      PP +    YS H+      DGR GR
Sbjct: 229 RSPPPMYPSYRDTRDYPPYRDTRDYSPHRDARDYYDGRGGR 269


>03_01_0030 + 290232-291020
          Length = 262

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 632 LRGRFTPDCIGRTICCPC 579
           LR    PD IG  +CCPC
Sbjct: 229 LRQSGWPDAIGSEVCCPC 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,986
Number of Sequences: 37544
Number of extensions: 264930
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)