Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P04
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            30   1.7  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_20413| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   5.3  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 625 PRSPSPTYALYAHRLHQPPMKHQPVYSDHKVXDGR 729
           PR+P PTY  +  R+H  P    P YS  +V   R
Sbjct: 409 PRTPVPTY--FTPRIHHSPRTSLPAYSTPRVHHSR 441



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 625 PRSPSPTYALYAHRLHQPPMKHQPVYSDHKV 717
           PR+P P Y   + R+HQ P    P YS  +V
Sbjct: 669 PRTPVPAYT--SPRVHQSPRTSLPAYSTPRV 697


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +1

Query: 580 HGQQMVRPMQSGVKRPRSPSPTYALYAH--RLHQ---PPMKHQPV 699
           H     R +   ++ PR+P PT+A Y H  R+H     P  H PV
Sbjct: 108 HTPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRRVHPRLHTPV 152


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +1

Query: 580 HGQQMVRPMQSGVKRPRSPSPTYALYAH--RLHQ---PPMKHQPV 699
           H     R +   ++ PR+P PT+A Y H  R+H     P  H PV
Sbjct: 108 HTPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRRVHPRLHTPV 152


>SB_20413| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 381

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -2

Query: 562 VCYVVEAYPDWEEAHPVLAVE---ASRTSALACYPFAAFSLVAFHWSLSVSF 416
           VCY+V   P    A  +L      A   + L C PFA  ++V   W L   F
Sbjct: 67  VCYIVYQKPAMRSAINLLLASLALADVLTTLVCMPFAFLTIVTQGWILGQEF 118


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 379 FMRLKKVLNEDVRRRQKE 432
           F++LKKVL+ED  +RQ+E
Sbjct: 82  FLQLKKVLSEDEEKRQRE 99


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 624 TTESLTYVCIVCTQITPASHETSTCL 701
           TTE+LT   I  +Q+TP+S  T+T +
Sbjct: 131 TTETLTTETIAASQLTPSSSATTTTI 156



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 624 TTESLTYVCIVCTQITPASHETSTCL 701
           TTE+LT   I  +Q+TP+S  T+T +
Sbjct: 332 TTETLTTETIAASQLTPSSSATTTTI 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,118
Number of Sequences: 59808
Number of extensions: 316275
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)