Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P02
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)              30   1.8  
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)                       29   5.5  
SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)                      29   5.5  
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)
          Length = 743

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 165 KMLKSVLKARAKSFLSISLKKRTFLSNDYKCNENWNSAISSPLLNKINLNDFYNKLDQTH 344
           KM K+ +K   KSF SIS  K    +ND +  + +N + SS  L   N+    +    + 
Sbjct: 94  KMSKNKIKKLKKSFKSISNTKLVIQNNDEQTIDLFNDSSSSSKL--FNMEGARSSKHHSE 151

Query: 345 SSKGIISAID 374
            S+G+   +D
Sbjct: 152 ESEGLCLRLD 161


>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
          Length = 270

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 183 LKARAKSFLSISLKKRTFLS-NDYKCNENWNSAISSPLLNKINLND 317
           L  R +S   +SL +++ +  NDY  N  W++A   P L +++  D
Sbjct: 58  LSQRRRSSAKVSLDEQSLVELNDYFANLCWDTAYEQPTLVEVHSED 103


>SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 228 RTFLSNDYKCNENWNSAISSPLLNKINLNDFYNKLDQTHSSKGII 362
           +TFL N+  CN   N + SS    +  L++  N L+ TH+   ++
Sbjct: 258 QTFLLNECGCNLGPNKSCSSGFTEEDFLSNLNNALELTHNELDLV 302


>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
          Length = 296

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 183 LKARAKSFLSISLKKRTFLS-NDYKCNENWNSAISSPLLNKINLND 317
           L  R +S   +SL +++ +  NDY  N  W++A   P L +++  D
Sbjct: 84  LSQRRRSSAKVSLDEQSLVELNDYFANLCWDTAYEQPTLVEVHSED 129


>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 183 LKARAKSFLSISLKKRTFLS-NDYKCNENWNSAISSPLLNKINLND 317
           L  R +S   +SL +++ +  NDY  N  W++A   P L +++  D
Sbjct: 118 LSQRRRSSAKVSLDEQSLVELNDYFANLCWDTAYEQPTLVEVHSED 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,382,611
Number of Sequences: 59808
Number of extensions: 304437
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)