Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_P01
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 194 6e-50
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 113 1e-25
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 113 1e-25
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 99 1e-21
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 8e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 44 1e-04
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 35 0.046
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 35 0.060
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 34 0.080
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.32
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 31 0.74
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 2.3
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48) 29 4.0
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 28 5.2
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 28 6.9
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.9
SB_59803| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 28 6.9
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37) 27 9.1
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 27 9.1
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38) 27 9.1
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 9.1
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05) 27 9.1
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 9.1
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 9.1
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 9.1
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05) 27 9.1
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 9.1
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 194 bits (472), Expect = 6e-50
Identities = 96/136 (70%), Positives = 100/136 (73%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXX 281
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 282 XXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAV 461
NY+TP LAVL++YKVDENGKI RLRREC E CGAGVFMA
Sbjct: 75 GGAKKRKKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMAS 134
Query: 462 MEDRHYCGKCHSTMVF 509
DR YCGKC T VF
Sbjct: 135 HFDRQYCGKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 395 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 471 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 113 bits (272), Expect = 1e-25
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/55 (58%), Positives = 44/55 (80%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 266
L VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYNI++ S LHL
Sbjct: 90 LDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 99 bits (238), Expect = 1e-21
Identities = 47/49 (95%), Positives = 48/49 (97%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 248
L VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 93 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +3
Query: 165 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +3
Query: 114 PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 269
P TI VK I+ K G P +QQRL+F G+ L D T I +TLHL+
Sbjct: 90 PKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 35.1 bits (77), Expect = 0.046
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 120 DTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKES 254
+T+ +K KI+ K+ P +LI+AGK L D L +YNI ++S
Sbjct: 87 ETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +3
Query: 156 KEGIPPNQQRLIFAGKQLEDGRTLSDYN 239
+EGIP +QRLIF GK L+D + L +++
Sbjct: 19 EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 34.3 bits (75), Expect = 0.080
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 135 VKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 248
+K++I+ K GIP + QRL F K+L D TL+ N+++
Sbjct: 32 LKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 162 GIPPNQQRLIFAGKQLEDGRTLSDYN 239
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 123 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 266
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 126 IENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDYNIQKESTLHLV 269
+EN +A ++ + G+P ++ L G QL D +TL+ Y++++ + +V
Sbjct: 23 VENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAYSVKENDVILMV 71
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 102 LXVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 248
L + + TIE ++ ++ DK G PP QR I K + +L +++
Sbjct: 50 LQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRE 98
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 113 AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 241
+ Y +E E + RQR +S E D+C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
Length = 947
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 46 KESEDANFRKDPHGQDHHPXRSS 114
++S DA +K PHGQD+ P R +
Sbjct: 617 RKSSDALNKKAPHGQDNRPKRKN 639
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 387 ENGKIHRLRRECTGEQC 437
+ G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 482 AVVTVLHHRHEHSGA 438
A++TV+HHRH H A
Sbjct: 525 AIITVIHHRHHHHPA 539
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 155 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 280
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 476
YK D GK+ L+R C ++C ++ V D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397
>SB_59803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 115 RQIPSRM*KLKFKTKRESLPINRG*SLLESSWKMDVPSRTTIS 243
+QIP M L ++ + E+ P+N +LL+ SW + + + T S
Sbjct: 123 KQIPP-MKDLVYEPREENFPLNSNPALLKVSWTVGIDNWVTAS 164
>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 497
YK D GK+ L+R C ++C + + C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 476
YK D GK+ L+R C ++C ++ V D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240
>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
Length = 493
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 63 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
Length = 856
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929
>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
Length = 403
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276
>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 342
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233
>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 369
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260
>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
Length = 415
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 66 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299
>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 470
YK D GK+ L+R C ++C ++ V D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,518
Number of Sequences: 59808
Number of extensions: 359260
Number of successful extensions: 920
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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