Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O24
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   189   1e-48
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  189 bits (461), Expect = 1e-48
 Identities = 95/141 (67%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
 Frame = +3

Query: 45  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 221
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 222 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXX 401
           MKVKADRDE+SPYAAMLAAQDVA++CK LGI ALHIKLRA            AQ      
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120

Query: 402 XXXXMKIGRIEDVTPVPSDST 464
               MKIGRIEDVTP+PSD T
Sbjct: 121 ARAGMKIGRIEDVTPIPSDCT 141


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 3   FFLDFDSSQAKG*AMAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTD 182
           FF  F +   +     PRKN  +K++++  +  +  V +T+F     F  FN+ F   ++
Sbjct: 20  FFFQFSAKYLEFSVNFPRKN--SKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQFFSN 77

Query: 183 LSGRE 197
           LS ++
Sbjct: 78  LSNKK 82


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 99  PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMK 227
           P H  G T FG  H   + +   + +TDL  R TIA VT G+K
Sbjct: 365 PIHRAG-TQFGFGH---TGHGCQMVITDLKNRVTIAYVTNGLK 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,144
Number of Sequences: 27780
Number of extensions: 279573
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)