Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O23
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    33   0.035
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    31   0.25 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    30   0.43 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    29   0.57 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    27   3.1  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   3.1  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   4.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.4  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    26   5.4  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.1  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = +3

Query: 363 GSYFCYDT---PGALV--DNFKDDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYFGV 527
           G  F YDT    GALV          LT      + S  S   ++   I G L D +FG 
Sbjct: 98  GLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALAD-FFGR 156

Query: 528 RLGTVIYMTIVFIGAVIFASGVYINTYWLMILGRFVFGIGGESLQVVVNNYV 683
           +    I   I+ +G+++  +  ++   W MI+GRFV G G     +++  Y+
Sbjct: 157 KPVIAIASIIIIVGSIVQVTAHHL---WHMIVGRFVIGWGVGIASLIIPLYL 205


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 237 VMDNPEASGSSRTPQISPTSWRHPANRIHRFIALLLMCFLCFGSYFCYDTPGALVDNFKD 416
           ++ NP+ +GSS    +S        + I RF+ LLL+ FLCF  +    TP A +  +  
Sbjct: 689 MLTNPDDAGSSNRFSMSVLPISPSLHSILRFL-LLLLAFLCFAMHILL-TPEATLRKWAS 746

Query: 417 DTHLT 431
             +L+
Sbjct: 747 SIYLS 751


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +3

Query: 570 AVIFASGVYINTYWLMILGRFVFGIGGESLQVVVNNYVVLWFKGKELNMVFGLQLSFSRF 749
           A + +SG +  TY +M  G F++G+GG ++Q+ +  ++ +  K K        +  F RF
Sbjct: 69  ATLLSSGAWSYTYGIM--GGFMYGVGG-TIQITLFLFLAIQIKKKAPAAHTVSECFFIRF 125

Query: 750 G 752
           G
Sbjct: 126 G 126


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/78 (23%), Positives = 38/78 (48%)
 Frame = +3

Query: 447 LLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASGVYINTYWLMILG 626
           L +++  + N+I+ F   YLV RY G R     +M+    G++   +G +++ ++ M   
Sbjct: 199 LPFTLMHFWNIIVQFSFDYLVVRYVGWRALAYFFMSSFLAGSLHPTAGHFLSEHYNMTRT 258

Query: 627 RFVFGIGGESLQVVVNNY 680
           R +    G+   +   +Y
Sbjct: 259 RLIASGPGKETPLETFSY 276


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
 Frame = -3

Query: 733 NCSPNT--MFSSFPLNHRXXXXXXXTCNDSPPIPNTNLPSIISQYVF------I*TPLAN 578
           NC+ +T  +++S P+           C  S  +P T+ P   S Y          TP+  
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTN--CTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588

Query: 577 MTAPIKTMVMYITVPNLTPKYLSTKYPPIKHNIT 476
                 T V+Y + P  +P   S+    +  N T
Sbjct: 589 TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNST 622


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 453 YSIYSWPNVILCFIGGYLVDRYFGVRLGTVI 545
           YS+  W  +I+ ++GGY++ R + ++LG  I
Sbjct: 12  YSLKDWIRIIV-YVGGYMLIRPYLMKLGAKI 41


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
 Frame = +3

Query: 309 ANRIHRFIALLLMCFLCFGSYFCYDTPGAL----VDNFKDDTHLTTSQFTLLYSIYSWPN 476
           A R+   I L++M  +C      Y    AL    +   K DTH+    ++ + +++    
Sbjct: 66  ARRVLWKIDLVMMPVMCITYMIQYLDKTALSYAALYGMKTDTHIDGHTYSSMTTLFYAGY 125

Query: 477 VILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASGVYINTYWLMILGRFVFGIGGES 656
           ++  +    L+ +    RL   I+  +    A++       N   L+ L RF+ GI   S
Sbjct: 126 LVAQYPAAILMQK---CRLSYFIFCNVFLWSAMVCLMAACRNGPSLLGL-RFLAGIFEAS 181

Query: 657 LQVVVNNYVVLWFKGKELNM 716
           +     N   +W++ +E  M
Sbjct: 182 ITPAFINITAMWYRREEQPM 201


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 414 DDTHLTTSQFTLLYSIYSWPNVILCFIGGYLVDRY-FG--VRLGTVIYMTIVFIGAVIFA 584
           DD H+T++Q+  L +++    ++  F G Y++  +  G  V L T  +  IVF+    + 
Sbjct: 130 DDVHITSNQYNNLNTLFYVGYIVGQFPGHYIMQTFPLGKFVGLVTFSWSVIVFLHCCAYN 189

Query: 585 SG 590
            G
Sbjct: 190 YG 191


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 306  PANRIHRFIALLLMCFLC 359
            P+N   R IALLL C++C
Sbjct: 954  PSNFYKRLIALLLFCWIC 971


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 420 THLTTSQFTLLYSIYSWPNVILCFIGGYLVDRYF 521
           TH++ ++  LL S+     V+LC IG   V+R +
Sbjct: 763 THISKTRSLLLDSLSQQSKVLLCKIGNAAVNRVY 796


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 543 IYMTIVFIGAVIFASGVYINTYWLMILGRFVFGIGGESLQVVVNNYVVLWFKGKELNMVF 722
           I +TI  +GA     G         +  RF  G+    L   +  Y+  W++GK L    
Sbjct: 163 IQLTIGVVGACHAVLGTKHGNAQSYVALRFFLGVAESGLWPGLAYYMSRWYRGKHLGKRI 222

Query: 723 G 725
           G
Sbjct: 223 G 223


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 425 FDNFPVYFALFYIFMAQCYIMLYWWILS 508
           F +FP+   LF+ F+  C  + + + LS
Sbjct: 147 FSSFPILHFLFFFFLCVCVFLSFLFSLS 174


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +3

Query: 444 TLLYSIYSWPNVILCFIGGYLVDRYFGVRLGTVIYMTIVFIGAVIFASGVYINTYWLMIL 623
           TL+  I+ +P  +LCF      + Y       V+       G +++      N  +L+++
Sbjct: 132 TLISLIFLYP--MLCFANPKSANGYTLYFRPMVVSSFAHIFGHLLYCMAYRANWIYLILI 189

Query: 624 GRFVFGIG 647
           GR + GIG
Sbjct: 190 GRMLNGIG 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,338
Number of Sequences: 5004
Number of extensions: 68820
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)