Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_O21
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 87 2e-18
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 60 4e-10
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.76
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 29 1.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 1.8
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 2.3
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 27 3.1
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.4
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 26 5.4
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 26 7.1
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 26 7.1
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 87.4 bits (207), Expect = 2e-18
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Frame = +1
Query: 424 IGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTN 603
+G ++ Q++ ++ DDIMD S RRG PCWY P VG A ND+ ++ S+++ LK +
Sbjct: 80 LGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKH 138
Query: 604 FRTNPNYMKMFELFNETLWRTSMGQHLDHVTG-NRKTDYSSFTLDR 738
FR Y+ + ELF++ ++T +GQ LD +T D S F+L +
Sbjct: 139 FRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQK 184
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 60.1 bits (139), Expect = 4e-10
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 433 WLKKFQAYCIVL-DDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFR 609
WL + C ++ DDIMD S RRG+ CWY VG+ A N+S L+ + + ++ FR
Sbjct: 87 WLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYFR 144
Query: 610 TNPNYMKMFELFNETLWRTSMGQHLD 687
P Y+ + + F E + T +GQ D
Sbjct: 145 NMPYYVDLLDTFREVTFLTELGQQED 170
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -3
Query: 381 NYFREEIVEHF---LFINYFEIF*GCRHICAIILISDQLWPIFVCNF 250
N F ++++E+F + ++YF IF H+C+ S +W +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 292 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKL 408
N S+N T + NL+ + KK +LP +TLQ K KL
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKL 290
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 405 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHICAIILISDQLWP 268
LGF + H+Y HF+ ++ +F CR I +L S L P
Sbjct: 97 LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 69 LWSLLITFSWIILHHYCLSSAVWIATWTEL 158
LW +LI+ + + + +CL +VW W EL
Sbjct: 578 LWYILISTIYSLAYAFCLGISVW-TPWREL 606
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 327 SRNN**KEN--VRRSPP*SNYDTTKQIQVI*SAPNRGLVEKVS 449
SRNN K N + SPP SN ++ K+ N G VE++S
Sbjct: 29 SRNNYSKVNASINPSPPRSNDNSNKEFSYSKDVNNNGAVEELS 71
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -1
Query: 347 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 255
FSL+IS FF +++I A+L L + SC YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 334 IINEKKMFDDL--LPEVIMTLQNKSKLSEVPQIGDWLKKFQ 450
+ N+ DD+ V+ L+NKSKL + Q+ + KF+
Sbjct: 297 LTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKFR 337
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +1
Query: 346 KKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRR 525
K +FD ++ +V+ + + ++ +G +L Y + DD+ D R+ M + R+
Sbjct: 291 KLLFDYVVSQVVKYPYFVTDIYQIHLLGVYLNLKHVYLLENDDVEDAYYERQWMQAFQRK 350
Query: 526 PEVGITCAFNDSLLI 570
V + +L I
Sbjct: 351 NVVAVAEELQTALRI 365
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 273 WPIFVCNFTGKFETIKYTHVYYVMKSNALVEPYTFLFSTVQSTL 142
WP VC ++ FE + Y + +S L L+ T + L
Sbjct: 16 WPADVCKYSQVFEDVLVVGTYMLDESTKLRHGKLVLYDTKEDVL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,609
Number of Sequences: 5004
Number of extensions: 68609
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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