Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O21
         (791 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J05262-1|AAA52423.1|  353|Homo sapiens FDPS protein.                   83   1e-15
M29863-1|AAA35820.1|  346|Homo sapiens protein ( Human farnesyl ...    82   2e-15
D14697-1|BAA03523.2|  420|Homo sapiens KIAA1293 protein.               82   2e-15
BC010004-1|AAH10004.1|  419|Homo sapiens farnesyl diphosphate sy...    82   2e-15
AL139410-1|CAI12715.1|  419|Homo sapiens farnesyl diphosphate sy...    82   2e-15
Z47055-1|CAA87327.1|  348|Homo sapiens farnesyl pyrophosphate sy...    80   1e-14
BC050292-1|AAH50292.1|  298|Homo sapiens LOC619190 protein protein.    71   4e-12

>J05262-1|AAA52423.1|  353|Homo sapiens FDPS protein.
          Length = 353

 Score = 83.0 bits (196), Expect = 1e-15
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 391 QNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLI 570
           Q+   L     +G  ++  QA+ +V DDIMD S  RRG  CWY++P VG+  A ND+ L+
Sbjct: 77  QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQTCWYQKPGVGLD-AINDANLL 135

Query: 571 HSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 738
            + ++  LK   R  P Y+ + ELF ++ ++T +GQ LD +T  +   D   FT  R
Sbjct: 136 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 192


>M29863-1|AAA35820.1|  346|Homo sapiens protein ( Human farnesyl
           pyrophosphate synthetase mRNA (hpt807), 3' end. ).
          Length = 346

 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 391 QNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLI 570
           Q+   L     +G  ++  QA+ +V DDIMD S  RRG  CWY++P VG+  A ND+ L+
Sbjct: 70  QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLL 128

Query: 571 HSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 738
            + ++  LK   R  P Y+ + ELF ++ ++T +GQ LD +T  +   D   FT  R
Sbjct: 129 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 185


>D14697-1|BAA03523.2|  420|Homo sapiens KIAA1293 protein.
          Length = 420

 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 391 QNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLI 570
           Q+   L     +G  ++  QA+ +V DDIMD S  RRG  CWY++P VG+  A ND+ L+
Sbjct: 144 QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLL 202

Query: 571 HSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 738
            + ++  LK   R  P Y+ + ELF ++ ++T +GQ LD +T  +   D   FT  R
Sbjct: 203 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 259


>BC010004-1|AAH10004.1|  419|Homo sapiens farnesyl diphosphate
           synthase (farnesyl pyrophosphate synthetase,
           dimethylallyl protein.
          Length = 419

 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 391 QNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLI 570
           Q+   L     +G  ++  QA+ +V DDIMD S  RRG  CWY++P VG+  A ND+ L+
Sbjct: 143 QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLL 201

Query: 571 HSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 738
            + ++  LK   R  P Y+ + ELF ++ ++T +GQ LD +T  +   D   FT  R
Sbjct: 202 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 258


>AL139410-1|CAI12715.1|  419|Homo sapiens farnesyl diphosphate
           synthase (farnesyl pyrophosphate synthetase,
           dimethylallyl protein.
          Length = 419

 Score = 82.2 bits (194), Expect = 2e-15
 Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 391 QNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLI 570
           Q+   L     +G  ++  QA+ +V DDIMD S  RRG  CWY++P VG+  A ND+ L+
Sbjct: 143 QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLL 201

Query: 571 HSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDR 738
            + ++  LK   R  P Y+ + ELF ++ ++T +GQ LD +T  +   D   FT  R
Sbjct: 202 EACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKR 258


>Z47055-1|CAA87327.1|  348|Homo sapiens farnesyl pyrophosphate
           synthetase like-4 protein.
          Length = 348

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
 Frame = +1

Query: 391 QNKSKLSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLI 570
           Q+   L     +G  ++  QA+ +V DDIMD S  RRG  CWY++P VG+  A +D+ L+
Sbjct: 72  QDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AIDDANLL 130

Query: 571 HSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVTGNR-KTDYSSFTLDRXXX 747
            + ++  LK   R  P Y+ + ELF ++ ++T +GQ LD +T  +   D   FT  R   
Sbjct: 131 EACIYPLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTXPQGNVDLVRFTEKRYIS 190

Query: 748 XXXXXXXXXXXNLP 789
                       LP
Sbjct: 191 IVKYKTALSSSYLP 204


>BC050292-1|AAH50292.1|  298|Homo sapiens LOC619190 protein protein.
          Length = 298

 Score = 71.3 bits (167), Expect = 4e-12
 Identities = 34/97 (35%), Positives = 57/97 (58%)
 Frame = +1

Query: 406 LSEVPQIGDWLKKFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLF 585
           L   P +G + +  QA+ +V DDIMD S   +G   WY++  +G+  A ND++L+ + ++
Sbjct: 50  LQWAPTVGWYAQLLQAFFLVADDIMDSSLTCQGQISWYQKLGMGLD-AINDAILLEACIY 108

Query: 586 EFLKTNFRTNPNYMKMFELFNETLWRTSMGQHLDHVT 696
             LK   R  P Y+ + ELF +  ++T +GQ LD +T
Sbjct: 109 CLLKLYCREQPYYLNLMELFQQNSYQTEIGQTLDLIT 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,500,197
Number of Sequences: 237096
Number of extensions: 2241304
Number of successful extensions: 3713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3706
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)