Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_O20
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 75 6e-14
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 70 2e-12
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 30 2.3
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 30 2.3
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 30 2.3
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 30 2.3
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 29 5.4
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 29 5.4
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 9.5
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 74.9 bits (176), Expect = 6e-14
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = +1
Query: 640 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 819
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 820 PLTXE 834
PLT E
Sbjct: 71 PLTTE 75
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +1
Query: 634 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 813
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 814 KFPLTXE 834
K P T E
Sbjct: 68 KAPHTTE 74
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 150 TCVSQNTGTCPESSCACPEISCACPETSCACP 245
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 150 TCVSQNTGTCPESSCACPEISCACPETSCACP 245
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 150 TCVSQNTGTCPESSCACPEISCACPETSCACP 245
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 150 TCVSQNTGTCPESSCACPEISCACPETSCACP 245
TC G E SC C + SC+ C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 693 YSLPMFTFYNLPLSLKCFSNRFHYFF 616
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 189 SCACPEISCACPETSCACPES 251
+C E SC+C C+CPES
Sbjct: 99 ACDDSECSCSCSGGECSCPES 119
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 189 SCACPEISCACPETSCACPES 251
+C E SC+C C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 631 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 768
P K LK K+ K +H K ++K+ + + P PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,556,956
Number of Sequences: 27780
Number of extensions: 176367
Number of successful extensions: 754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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