Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O14
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   1.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   1.5  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   6.1  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   8.0  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 30  EXLPFDIHNRYKLTLYFILYAGSGLSAPYL 119
           E   F+++N Y LTL+ I++      AP++
Sbjct: 472 EKRSFEVNNMYSLTLFDIIFKSGMKIAPFI 501


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +1

Query: 79  SSYMRALDYQHPISSPVTSF*RSNSSCRDPLLVLGLS**KTVHYESLWMSKINYM 243
           +S    L Y  PI+SP TS    N    D +    LS     + +S   S INY+
Sbjct: 178 TSVSSTLTYHTPIASPTTSSNSDNEYTVDVITSSSLSSFVITNVDSTTTSVINYI 232


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 57  RYKLTLYFILYAGSGLS 107
           RY+LTLY +LY  S +S
Sbjct: 525 RYRLTLYIMLYTLSQIS 541


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 187 LNLKQAKDLCSLNYFFKSW 131
           L L+  +DLC  N F K+W
Sbjct: 337 LTLEGTRDLCIRNLFRKTW 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,625
Number of Sequences: 5004
Number of extensions: 15819
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)