Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O14
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0041 - 14007687-14009381                                         27   4.3  
07_03_1010 - 23276442-23276681,23277022-23277267                       26   7.6  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    26   7.6  

>03_03_0041 - 14007687-14009381
          Length = 564

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 59  LQADIVFHPICGLWTISTLSHHPSPA 136
           L  D++FHP C   T+S L   P P+
Sbjct: 59  LPGDLLFHPACVRLTLSHLLPSPDPS 84


>07_03_1010 - 23276442-23276681,23277022-23277267
          Length = 161

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 98  WTISTLSHHPSPAFEE 145
           W I T+ H PSPA +E
Sbjct: 122 WIIKTMKHEPSPAQDE 137


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 98  WTISTLSHHPSPAFEE 145
           W I T+ H PSPA +E
Sbjct: 156 WIIKTMKHEPSPAQDE 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,073,591
Number of Sequences: 37544
Number of extensions: 100849
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)