Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O14
         (358 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VI...    53   2e-07
X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc ...    48   6e-06
BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase su...    48   6e-06
BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase su...    48   6e-06
BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase su...    48   6e-06
AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase su...    48   6e-06
AK094301-1|BAC04327.1|  351|Homo sapiens protein ( Homo sapiens ...    28   9.8  

>AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VIIc
           protein.
          Length = 63

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +3

Query: 24  PGEXLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLKK 146
           PG+ LPF + N+++L     +Y GSG +AP+ I RHQLLKK
Sbjct: 23  PGKNLPFSVENKWRLLAMMTVYFGSGFAAPFFIVRHQLLKK 63


>X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc
           gene for subunit VIIc of cytochrome c oxidase (EC
           1.9.3.1).  ).
          Length = 63

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 24  PGEXLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 143
           PG+ LPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 23  PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 24  PGEXLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 143
           PG+ LPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 23  PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 24  PGEXLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 143
           PG+ LPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 23  PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 24  PGEXLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 143
           PG+ LPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 23  PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc precursor protein.
          Length = 63

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 26/40 (65%)
 Frame = +3

Query: 24  PGEXLPFDIHNRYKLTLYFILYAGSGLSAPYLITRHQLLK 143
           PG+ LPF + N++ L     LY GS  + P+L+ RHQLLK
Sbjct: 23  PGKNLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>AK094301-1|BAC04327.1|  351|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36982 fis, clone BRACE2006488, highly similar to
           POLY(RC) BINDING PROTEIN 2. ).
          Length = 351

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 101 TISTLSHHPSPAF 139
           T+STLSHHP P F
Sbjct: 17  TLSTLSHHPQPQF 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,956,917
Number of Sequences: 237096
Number of extensions: 575587
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2133208582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)