Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O13
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...   102   7e-23
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    27   4.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   4.0  
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   5.3  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   9.2  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   9.2  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score =  102 bits (244), Expect = 7e-23
 Identities = 61/152 (40%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
 Frame = +3

Query: 252 YLLVYNAAQTLGW-SYMLWQSLVHFLNRGTLDAFWSEIKWTVIIFQNAAVLEILHAAVGL 428
           YL +YN      W S +L   L+  + + T   F  E    V   Q  A+ E+ H+  GL
Sbjct: 9   YLKLYNVISCFLWMSVLLRTGLIWGITKDTAVVF-HETNTLVRWVQTLAIAEVFHSIFGL 67

Query: 429 VPSSVFVVLMQVYSRVFLVCGALLATQGATT-SPGLPLCILAWSITEIIRYAYYALNLVD 605
           V SS    ++QV SR++LV G           SP     I+AWSITEIIRYA+YA NL  
Sbjct: 68  VSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSITEIIRYAFYAFNLNG 127

Query: 606 IVPSSLTFLRYSTFLVMYPLGITGELLCMYHS 701
            +P+ LT+LRY+TFL++YP+G   E L +  S
Sbjct: 128 DIPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 500 GNTRSDYKSRVASVYTRLVDN*NHKI 577
           G T S+Y++R+ S+Y  L D  N K+
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKL 198


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 382 NIMTVHLISLQKASKVPRFKKCTNDCHS 299
           NI  VH ++++ A KV R   C  D HS
Sbjct: 335 NIAFVHFLNIRDAIKVVRTLSCDPDYHS 362


>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 29/124 (23%), Positives = 50/124 (40%)
 Frame = +3

Query: 366 WTVIIFQNAAVLEILHAAVGLVPSSVFVVLMQVYSRVFLVCGALLATQGATTSPGLPLCI 545
           W  +IF     L +  +   +   SVF V++ +      VC   +   GA  S    +CI
Sbjct: 94  WGPLIFSLVIALALALSTDKIERESVFTVVVALIWFGEAVCSLNIKLLGANISIFQSMCI 153

Query: 546 LAWSITEIIRYAYYALNLVDIVPSSLTFLRYSTFLVMYPLGITGELLCMYHSLDEIFEKK 725
           L +S   ++     A  +   VP  L F+R    + MY   +   +  + +S   +  KK
Sbjct: 154 LGYSSFPLM----IASIVCAFVP--LIFIRIPVIVAMYAWTLFAAMGVLQNS--NLSNKK 205

Query: 726 LFTI 737
           L  +
Sbjct: 206 LLAV 209


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 760 KFQAFGIEMVKSFFSKISSNEWYMQSSSPVIPRGYITRNVEY-LKNVSD 617
           +F A  +  V+S   K+ S  +Y+Q S+    R Y+     Y LK++ D
Sbjct: 463 EFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIFD 511


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 724 NFSPSQCRMLGISRLTI 774
           NF+PSQ ++LGI+  TI
Sbjct: 168 NFTPSQLQLLGITNSTI 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,707
Number of Sequences: 5004
Number of extensions: 73049
Number of successful extensions: 212
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)