Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O13
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 137 LVKDFV*KISLNIKFYINLNNVQQGNEKQHLWTFDWKDL 253
           LVK+ + K+ + +  ++   N  Q +  Q  W ++WK+L
Sbjct: 600 LVKNIIPKLQIALSEFVI--NPHQQHLDQWNWVYEWKEL 636


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 572 KICLLRSQSGRYCTLIADVFEVFH 643
           ++C+L  Q+ R C LI D+F+  H
Sbjct: 35  EVCVL--QANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 572 KICLLRSQSGRYCTLIADVFEVFH 643
           ++C+L  Q+ R C LI D+F+  H
Sbjct: 18  EVCVL--QANRACILIKDLFDNVH 39


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 222 NTSGLSIGKIYLLVYNAAQTLGWSYMLWQSLVHFL 326
           NTS +S+ K      + +  +GWS  L  SLV+ +
Sbjct: 377 NTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYII 411


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 466 IQECFWYVELYWQHKERLQVQ 528
           IQ C  Y+E +  HK++L+++
Sbjct: 127 IQICPIYIESFSYHKQKLRLR 147


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 337  LWMLFGVRSSGLSLY 381
            +W+ FG R   L LY
Sbjct: 1002 VWLFFGCRQRNLDLY 1016


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,361
Number of Sequences: 438
Number of extensions: 4944
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)