Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O09
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...   128   6e-31
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    29   0.68 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.8  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    25   8.4  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score =  128 bits (310), Expect = 6e-31
 Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
 Frame = +3

Query: 225 LDSMKVIAESVGIATLGDDAAKELADDVTYRLKVIVQDAMKFMHHSKRQKLSITDIDHAL 404
           ++S+K +AE +GI  L D+ A  +A D+ YR+  +VQ+A KFM HSKR  L+  DI  AL
Sbjct: 8   IESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSAL 67

Query: 405 KIKNNECQYGFIQPDSLPFRFAS--GGGRELHFIEEKEIDLSEILSAPPPKVPLDVSVRA 578
           +  N E  YGF     L F  A+   G   L++++++E+D  +I++AP PKVP ++S  A
Sbjct: 68  RTLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSA 127

Query: 579 HWLSVDGVQPTVPENPPP 632
           HWL+++GVQP +P+NP P
Sbjct: 128 HWLAIEGVQPAIPQNPTP 145


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 609 LVEPHPHLANVHEQIHPMEPLGVVLIESPRDLSLFL---Q*NGVLYL 478
           L+  HP L +V E++    P  V  IE P++L L L   Q  GV +L
Sbjct: 322 LIRQHPELEHVWEKLEEEAPREVKQIEQPKELVLNLLPFQREGVYWL 368


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 219  LTLDSMKVIAESVGIATLGDDAAKELADDVTYR 317
            +TLD       +  + TL DD   EL DDV  +
Sbjct: 906  VTLDEFSAPLYATWLTTLDDDELSELTDDVVQK 938


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 621 FQVLLVEPHPHLANVHEQIHPMEPLGV 541
           F +LL +P+PH+ N+   +     +GV
Sbjct: 149 FPLLLQDPNPHVVNIASSLAYFSAMGV 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,414
Number of Sequences: 5004
Number of extensions: 57677
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)