Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_O05
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.5  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    25   6.0  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   7.9  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 246  WLYLGLMHIIKLYHISVILILRL 314
            WLYLGL+  ++   I +IL+  L
Sbjct: 2292 WLYLGLLDTVQTVGIGIILLQTL 2314


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 85  FWCNYQYVKLETYYN-VYSLXRILHPLVQTYL 177
           F  N  Y +L + YN VYSL  I+ PLV  +L
Sbjct: 382 FGHNGPYTQLFSAYNIVYSLGMIIGPLVAGFL 413


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 230 CRGYLVALFRTYAYYKTIPHKCHF 301
           CR +L AL+  Y+Y   +P    F
Sbjct: 70  CRTFLEALYEKYSYSSPLPSSVEF 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,641
Number of Sequences: 5004
Number of extensions: 38864
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)