Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N24
         (884 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    29   0.19 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   7.1  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   9.4  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +1

Query: 292  QQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVLETNKKLQNVVD 471
            QQ+K  +E+     KE +    +  +++K+N  LK ++ +   E  +V   NK      D
Sbjct: 871  QQIKQHKEKMNSQSKELKAKYHQRDKLLKQNDELKLEIKKKENEITKVRNENK------D 924

Query: 472  GFDQCSG 492
            G+D+ SG
Sbjct: 925  GYDRISG 931


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 514 LSAELKVKLSQAHDCISNLQLEITNLKAQKT 606
           L+ ++K+KLSQ  D     Q+  TNL  ++T
Sbjct: 49  LTVKIKLKLSQLIDVNLKNQIMTTNLWVEQT 79


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 725 ECVLSESPPVKSIVGMSHSEVVITVPEAGSLSISSEYRLCVFWAFRFVISNCKLEIQS 552
           E VL+E  P  S +     E  I       +  +  + LC +  + F    CK++IQS
Sbjct: 2   EAVLNEKFPDLSSITSDLEEHEIFPTSNAIIWTTVTHILCAYLCYIFSKFACKIQIQS 59


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,393
Number of Sequences: 2352
Number of extensions: 14288
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)