Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N14
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14...    32   0.68 
09_04_0164 + 15265878-15268701,15268782-15269200                       30   2.7  
09_02_0001 - 2857651-2857923,2858089-2858283                           29   4.8  
06_03_0188 - 17691582-17692241                                         29   4.8  
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    29   6.3  
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726...    29   6.3  

>03_01_0017 -
           148934-148999,149000-149074,149343-149408,149737-149793,
           150422-150537,150821-151103,151413-151468,151585-151682,
           152233-152291,152747-152818,152892-153077,153303-153305
          Length = 378

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
 Frame = +3

Query: 78  SPSNRSELRIDFAKKXFFLRESHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLS 257
           SPS  +  + DF K   +L E+  +Y  + R  L  + TV  +          +  KLL 
Sbjct: 22  SPSRNASSKYDFVKVKVWLGENADHYYVLSRFLLCRMLTVTKIPNHVAIKIALELKKLL- 80

Query: 258 DIDNSIENGVQAKSDGS---HKYLSITQGPLPS 347
            +DNS+ + ++ +  G    ++Y  +T  PL S
Sbjct: 81  -VDNSLLDLMEKRGYGEDYINRYKMMTSAPLTS 112


>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 420 WFKNDSPVYEYDVESNELIDSSPTSI 497
           W  N + +Y  DVE+N L D  PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332


>09_02_0001 - 2857651-2857923,2858089-2858283
          Length = 155

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 703 ATGWCSRAASRDTPSPRSPGSTDRMCP 783
           ATGWCS +     P  R PG+ +R  P
Sbjct: 98  ATGWCSASRRSLLPVVRHPGTIERPLP 124


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 685 PTWTTSATGWCSRAASRDTPSPRSPGSTDRMCPLK 789
           P WTT+ T     A+ R+T  P  P + +   PL+
Sbjct: 35  PPWTTTTTTMAVPASPRETAFPTKPSNANVSSPLR 69


>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 396 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 545
           GSP P +H F+N++   E ++ SN   +SS      I ++   T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282


>01_01_0920 +
           7264498-7264573,7264705-7264745,7265339-7265408,
           7265500-7265648,7266143-7266238,7266326-7266396,
           7266510-7266571,7266651-7266714,7267608-7267692,
           7267777-7267903,7268016-7268080,7268739-7268796,
           7268927-7269066,7269624-7269693,7269910-7269981,
           7270188-7270234,7270468-7270566
          Length = 463

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 321 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 449
           S  +GP P+  HT   T ++T     A S  P   W K+   +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,470,691
Number of Sequences: 37544
Number of extensions: 459456
Number of successful extensions: 1341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)