Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_N13
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1350 - 26312275-26313613,26314833-26315110 31 0.80
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 30 1.8
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 30 1.8
04_04_0734 + 27648661-27649596 30 2.4
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 29 3.2
12_02_0273 + 16642682-16642842,16643927-16644275 29 4.3
08_01_0542 + 4712480-4712635,4712683-4712787 29 4.3
08_01_0437 + 3850137-3850581,3851134-3851159 28 7.4
12_02_0766 - 22982606-22983288,22984352-22984706 28 9.8
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 31.5 bits (68), Expect = 0.80
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = -1
Query: 688 RRNC-TSHSILYANVC-NTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQ 515
R NC T H++ Y C + +S+P IS L ++ +RN+P
Sbjct: 387 RINCGTLHNVAYQENCWSEAQSSSSPPDISELG-DERGGFSSGEETMYSAETRESRNIPS 445
Query: 514 PQDMS--M*SLCSDHWNHMRRPSSRNVDIRHSRATVGKTFLPFRIT*SATSSAVDTYSLG 341
P++ + M NH + S ++V+ + TF+P R ++A+ S
Sbjct: 446 PKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPLRKP-HLQAAAISQKSQD 504
Query: 340 ICIFHAEHSTNTEKRNLTE 284
F S++ +KRNL++
Sbjct: 505 --FFSPTVSSSMKKRNLSQ 521
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +2
Query: 446 PGGRSPHVVPVVRAERLHGHVL-GLRQIPRHNVCDS--KFIWSIRRMCYGARKAQSGYRL 616
PGG S G V G R+ + V D+ + + +RR+ YG R+ SG RL
Sbjct: 97 PGGGSARSAAAAAPTGRPGTVAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRERGSGRRL 156
Query: 617 RRAVLHSCITDIRVQYTMG 673
R L C+T+ V + G
Sbjct: 157 TR--LGWCMTEFGVDHGGG 173
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 626 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAXARREQTE 796
VL + D+R YT GR + QFG+ T G R +S+ R A R+ E
Sbjct: 54 VLGRPMEDVRATYTFGRELGRGQFGVTYLVT-HKATGKRFACKSIATRKLAHRDDIE 109
>04_04_0734 + 27648661-27649596
Length = 311
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 753 CALQREPPPTPAVALRSMPNCGEG 682
CA PPP+PA L+ +P C G
Sbjct: 205 CAPPPNPPPSPATPLQPLPECDGG 228
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 626 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAXARREQTE 796
VL + D+R YT GR + QFG+ AT G R +S+ R AR + +
Sbjct: 78 VLGRPMEDVRATYTFGRELGRGQFGVTYLAT-HKPTGRRYACKSIAARKLARPDDLD 133
>12_02_0273 + 16642682-16642842,16643927-16644275
Length = 169
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -1
Query: 340 ICIFHAEHSTNTEKRNLTESEIQVVTSLVGRPLSNDV*FLDEYPVSKLMLIITQNL-KNH 164
+ I H E RNLT S + RP + F EY +S L L T+ ++H
Sbjct: 8 LIILHQPRLLEAENRNLTASATLRSPEYLTRPTRDFTFFAPEYIISSLRLTATKKSGRSH 67
Query: 163 INN 155
+ N
Sbjct: 68 LIN 70
>08_01_0542 + 4712480-4712635,4712683-4712787
Length = 86
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 430 ALYPHSWRTVSACGSSGQ---SRETTWTCPGAAANSS 531
A+ H+W +CGSSG + ETT T P A S
Sbjct: 14 AMIAHAWHDDGSCGSSGAAAIAAETTQTAPTTEARIS 50
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 717 VALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 604
V LRS P CG R +V+C +Q ARR+R P
Sbjct: 12 VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48
>12_02_0766 - 22982606-22983288,22984352-22984706
Length = 345
Score = 27.9 bits (59), Expect = 9.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +1
Query: 427 CALYPHSWRTVSACGSSGQSRETTW 501
C YP +W + C G+S+ W
Sbjct: 170 CIGYPPAWEKIKICSGHGRSKHGAW 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,012,120
Number of Sequences: 37544
Number of extensions: 417500
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -