Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_N13
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58728-5|AAB00591.1| 277|Caenorhabditis elegans Surfeit homolog... 156 1e-38
Y14949-1|CAA75173.1| 277|Caenorhabditis elegans SURF-4 protein ... 154 6e-38
Z81581-7|CAB04659.1| 269|Caenorhabditis elegans Hypothetical pr... 73 3e-13
AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical ... 31 1.3
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr... 29 2.9
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr... 29 2.9
U21324-9|AAA62560.2| 755|Caenorhabditis elegans Coenzyme q (ubi... 29 3.8
AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm rece... 28 6.7
Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical pr... 28 8.9
DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein. 28 8.9
>U58728-5|AAB00591.1| 277|Caenorhabditis elegans Surfeit homolog
protein 4 protein.
Length = 277
Score = 156 bits (379), Expect = 1e-38
Identities = 74/151 (49%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Frame = +3
Query: 345 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWGCGK 524
NE ++ AED A+ RK + LP +ARLCL+STFLEDG+RM+FQW +Q+ +M SW CG
Sbjct: 11 NEMLAKAEDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGW 70
Query: 525 FLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXXXXX 704
F+AT+FVI N FGQ +M++ R KV +ACG+L IV+LQT AY ILWD++F
Sbjct: 71 FIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAV 130
Query: 705 XXXXXXXXXXXXXXXXSLFAGVPXLGE-NKP 794
SLFAGVP +G+ NKP
Sbjct: 131 GGGLLLLLAETQEEKASLFAGVPTMGDSNKP 161
>Y14949-1|CAA75173.1| 277|Caenorhabditis elegans SURF-4 protein
protein.
Length = 277
Score = 154 bits (374), Expect = 6e-38
Identities = 73/151 (48%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Frame = +3
Query: 345 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWGCGK 524
NE ++ ED A+ RK + LP +ARLCL+STFLEDG+RM+FQW +Q+ +M SW CG
Sbjct: 11 NEMLAKREDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGW 70
Query: 525 FLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXXXXX 704
F+AT+FVI N FGQ +M++ R KV +ACG+L IV+LQT AY ILWD++F
Sbjct: 71 FIATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAV 130
Query: 705 XXXXXXXXXXXXXXXXSLFAGVPXLGE-NKP 794
SLFAGVP +G+ NKP
Sbjct: 131 GGGLLLLLAETQEEKASLFAGVPTMGDSNKP 161
>Z81581-7|CAB04659.1| 269|Caenorhabditis elegans Hypothetical
protein T02E1.7 protein.
Length = 269
Score = 72.5 bits (170), Expect = 3e-13
Identities = 36/107 (33%), Positives = 55/107 (51%)
Frame = +3
Query: 345 NEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLEDGLRMWFQWSEQRDYMDMSWGCGK 524
N ++ ED + + R + VLPT+ RL LISTF+EDGLR+ F + ++ +WG
Sbjct: 4 NVVITRCEDYTETLARNTRKVLPTIGRLLLISTFVEDGLRLLFNTHDHVNHFSYNWGLNY 63
Query: 525 FLATMFVIVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSI 665
+ IV + L G + V+ R KV + VL F + Q Y +
Sbjct: 64 HFSLFLTIVMIINLLFGSLFVMMRYKVTESSAVLGFTIFAQVILYQL 110
>AF040661-9|AAG24214.1| 345|Caenorhabditis elegans Hypothetical
protein W10G11.5 protein.
Length = 345
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -1
Query: 667 SILYANVCNTTMKNSTPQAISTLSLPSTITHPP--N*PNKFTITNIVARNLPQPQDMSM* 494
++ ++ T S P + + LP+T+T P + T T + P+P
Sbjct: 112 TVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTTRKTTTTTLRPTKPRPMTKPRV 171
Query: 493 SLCSDHWNHMRRPSSR 446
+C W RPS +
Sbjct: 172 KVCPYGWATFNRPSGK 187
>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical
protein ZK370.4b protein.
Length = 1353
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 656 VQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAXARREQT 793
VQ + GRT P+ + + +A +GGGS R +S G + RR+ T
Sbjct: 142 VQDSPGRT-PTDESSDEENANVVMGGGSVPRRRSKHGNSSRRRQST 186
>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical
protein ZK370.4a protein.
Length = 1342
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 656 VQYTMGRTVPSPQFGIDRSATAGVGGGSR*RAQSVRGRAXARREQT 793
VQ + GRT P+ + + +A +GGGS R +S G + RR+ T
Sbjct: 142 VQDSPGRT-PTDESSDEENANVVMGGGSVPRRRSKHGNSSRRRQST 186
>U21324-9|AAA62560.2| 755|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 8 protein.
Length = 755
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 546 IVNLFGQLGGCVMVLGRLKVDIACGVLF 629
I +L +L GC ++ +LK ++CG LF
Sbjct: 709 IYSLHRKLSGCYLLAAKLKATVSCGGLF 736
>AC006777-7|AAK72306.2| 367|Caenorhabditis elegans Seven tm
receptor protein 222 protein.
Length = 367
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 272 LNLTFSEISFFGVSAVFCVKN 334
+N++F I FFG+ FC++N
Sbjct: 215 VNISFLAIFFFGIKCYFCIQN 235
>Z38112-7|CAA86231.3| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 330 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 434
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 1295 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1329
>Z38112-6|CAA86235.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 330 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 434
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 76 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 110
>Z35637-8|CAO82018.1| 2089|Caenorhabditis elegans Hypothetical protein
E03A3.6 protein.
Length = 2089
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 330 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 434
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 1295 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1329
>Z35637-7|CAA84690.2| 870|Caenorhabditis elegans Hypothetical
protein E03A3.6b protein.
Length = 870
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 330 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 434
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 76 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 110
>DQ858354-1|ABI14559.1| 2084|Caenorhabditis elegans UNC-79 protein.
Length = 2084
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 330 KMQIPNEYVSTAEDVADQVIRKGKNVLPTVARLCL 434
K + N ++S ++ D + G +LPTVA+L +
Sbjct: 1298 KAAVCNAFISGLPEILDMNLHTGNQLLPTVAQLLI 1332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,425
Number of Sequences: 27780
Number of extensions: 354172
Number of successful extensions: 1084
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -