Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N11
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RDH4 Cluster: Chromosome undetermined SCAF16481, whol...    34   4.6  
UniRef50_Q6BQG9 Cluster: Similar to CA5782|IPF1127 Candida albic...    34   4.6  
UniRef50_Q3LWC6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  

>UniRef50_Q4RDH4 Cluster: Chromosome undetermined SCAF16481, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF16481,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 90

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 127 LTSFPSNTI-NYIISYEATYRYILFSIYFSELINLKYIFFSHLNIFF 264
           L  FP+  I NY I     Y YIL+ IY S   N  Y  F HL+ FF
Sbjct: 5   LNFFPNTHIPNYFIFLNYLY-YILYFIYPSYFFNFHYPLFLHLSNFF 50


>UniRef50_Q6BQG9 Cluster: Similar to CA5782|IPF1127 Candida albicans
           IPF1127 unknown function; n=1; Debaryomyces
           hansenii|Rep: Similar to CA5782|IPF1127 Candida albicans
           IPF1127 unknown function - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 720

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +1

Query: 64  PYIFRDEARR*SKN*NYIPSP---LTSFPSNTINYIISYEATYRYILFSIYFSELINLKY 234
           P + RD  +    N  Y P P   L +FP+ T   I+SY+ T R   F  + S   NL  
Sbjct: 422 PKLMRDNNQSRVGNDTYNPYPPFILKNFPNLTSLCIVSYDFTNRQTQFQDFLSRSTNLTS 481

Query: 235 IFF-SHLNIFFYTL*RTLIVCERIWTSRNV 321
           ++  ++  I      + LIVC+  +  R +
Sbjct: 482 LYLENNEKISIKNFLQDLIVCDATFRLRKL 511


>UniRef50_Q3LWC6 Cluster: Putative uncharacterized protein; n=1;
           Bigelowiella natans|Rep: Putative uncharacterized
           protein - Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 160

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +3

Query: 66  LYFP*RST*VIKKLKLYPLSPHILPLQYNKLYYFV*GYI*VH-TFFNLFLGVN*FKIYFF 242
           LYF      +I ++K Y +  + L +++N+ + F+  +  ++ +FFN+ L V  F ++ F
Sbjct: 81  LYFLTTIQLIIFRVKYYYIFKNELKIKHNQYHQFLINHRKLYASFFNVILIVKTFLMFIF 140

Query: 243 LSFKHIFLYIVANVNS 290
           L +  I+ Y    +NS
Sbjct: 141 LFYLKIYKYSTNLINS 156


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,908,324
Number of Sequences: 1657284
Number of extensions: 12330203
Number of successful extensions: 25867
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25823
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)