Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N11
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   3.0  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   7.0  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    26   7.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.2  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -3

Query: 446  ISTKVFFYKQIQDFSILYLCLYIISMSLHIP 354
            I ++V F+++  DF++ Y+  Y+I +  H P
Sbjct: 958  IRSQVAFFQKTHDFTMEYVATYLIHLLSHHP 988


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 431 FFYKQIQDFSILYLCLYIISMSLH 360
           F Y  +Q+F +   C +++S  LH
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLH 381


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 768 IFFLXKRINKALFYIISFKNPLCIISLKISFTNF 667
           +F L  +I  ++  + +F+N L I+S ++SF +F
Sbjct: 88  VFQLLSKIRNSVPNVSAFRNNLSILSKELSFFSF 121


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 706 RIFEADYIKKRLVDSLX*KKNIQN 777
           R F  D++KKR+ DSL  + N+ N
Sbjct: 54  RPFFNDFLKKRITDSLNERPNLLN 77


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -1

Query: 421 NKFKTFLYYTFVYI*FLC---LFTYLHSF 344
           NKF  ++Y  F +  FLC   LF Y+  F
Sbjct: 75  NKFSIYIYIYFFFYSFLCSPYLFKYISLF 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,359
Number of Sequences: 5004
Number of extensions: 60706
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)