Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N11
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    31   1.2  
Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    28   8.6  
L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical pr...    28   8.6  
L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine re...    28   8.6  

>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 100 KN*NYIPSPLTSFPSNTINYIISYEATYRYILFS--IYFSELINLKYIFFS 246
           KN  +IP   T+FP        ++  TY+ ++F   I+F+ ++ +K + FS
Sbjct: 146 KNLKHIPDSCTTFPCTLNTCAYNWWTTYKSVIFPVIIFFTIILCIKLMLFS 196


>Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical
           protein F17A2.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -1

Query: 415 FKTFLYYTFVY-I*FLCLFTYLHSFNSRYFNFIHFC*SKFFHKLLT--FATMYKK 260
           F   ++Y  V+ + F C+ T+      +YF  +  C   FF  +LT  F T Y++
Sbjct: 244 FLPLIFYVPVFGLYFYCILTHTEILFQQYFMTVVPCLPAFFDPMLTLYFVTPYRR 298


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 154 NYIISYEATYRYILFSIYFSELI-NLKYIFFSHLNIFFYTL*RTLIVCERI 303
           N+ I  E   R+ +    F++L  + K+I F H    FY L R    C+R+
Sbjct: 310 NHYIEIEHIARFCMSIRVFAQLPKDQKWIIFKHFWTRFYELDRCFATCQRL 360


>L16622-5|ABC71836.1|  263|Caenorhabditis elegans Hypothetical
           protein C02D5.2b protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 117 PLSPHILPLQYNKLYYFV*GYI*VHTFFNLFLGVN 221
           PL PHI P   NK+  ++ G I + + F L+  +N
Sbjct: 11  PLLPHIRPSTRNKIRKYIYGTIFILSIFLLYRSLN 45


>L16622-4|AAA27914.1|  323|Caenorhabditis elegans Hypothetical
           protein C02D5.2a protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 117 PLSPHILPLQYNKLYYFV*GYI*VHTFFNLFLGVN 221
           PL PHI P   NK+  ++ G I + + F L+  +N
Sbjct: 71  PLLPHIRPSTRNKIRKYIYGTIFILSIFLLYRSLN 105


>AC006675-1|AAK84559.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein33 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 166 SYEATYRYILFSIYFSELINLKYIFFSHLNIFFYTL*RTLIVCERIWT 309
           S  +T   ILF+     ++N+   + SHL IF   +   L+V   +WT
Sbjct: 105 SLSSTSALILFTSRIFMIMNMYRQYLSHLRIFCELMIYVLVVIFGLWT 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,506,997
Number of Sequences: 27780
Number of extensions: 319199
Number of successful extensions: 668
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)