Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N10
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    31   0.16 
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.6  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   6.1  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   8.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   8.1  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   8.1  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   8.1  

>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 233 KVPKSRRILLYYCGFNY*NKTCKKMFV-LQKCVVVYIGCSVSLDGAVRI 376
           K+ K+ RI++Y C  ++   + +  ++ L K ++  + C VSL GA+RI
Sbjct: 88  KLLKTLRIVIYICTSDHWTHSLRFYYIELSKILLYLLICGVSLYGAIRI 136


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 285 KTKRVRKCLCYKNVLWCTLDAVFR 356
           K  R +KC  YKN + C L +V++
Sbjct: 896 KEMREQKCFSYKNFISCVLISVYQ 919


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 223 GTFITLPHVVCYLWQFFHH*HFIRRK 146
           G+F    + +C+ ++FF   H I RK
Sbjct: 508 GSFFAAAYAICHYYRFFRTSHTISRK 533


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 583 ILVRQY*VRLYSLQSHDLWSHYPIN---IWNTTKQAVIIYH*T 702
           IL  QY ++LY++ S  LW    +    IW  TK   +++H T
Sbjct: 4   ILKIQY-LKLYNVISCFLWMSVLLRTGLIWGITKDTAVVFHET 45


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/48 (20%), Positives = 20/48 (41%)
 Frame = +1

Query: 541 KYCLISSSILLDEVILVRQY*VRLYSLQSHDLWSHYPINIWNTTKQAV 684
           K  ++    L  +V ++  Y   ++       W  YP+N+ N    A+
Sbjct: 463 KLAMMDELFLTIDVTIMHHYACHVWQKLFETQWYEYPVNVMNRVNNAL 510


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 485 SPEQHVSSTLFITKRREFDRRHLAFNSNMANSLGQQQSEQR 363
           SP++HV+ +  + +   FD  H   + ++ N     Q E+R
Sbjct: 27  SPKRHVNGSNSLKRGLHFDGEHTERDPHLGNGQKYTQQERR 67


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 299 KKMFVLQKCVVVYIGCSVSLDGAVRIVADQASSPCC 406
           +K    + CV +  GCS  +     +   QA+ PCC
Sbjct: 70  QKQIFCKLCVDICNGCSTPICEFNAVSNSQANHPCC 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,252
Number of Sequences: 5004
Number of extensions: 63682
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)