Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N10
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0408 - 16829483-16829545,16830359-16830467,16830650-168308...    31   0.90 
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309...    29   2.8  
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12...    29   4.8  
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    28   6.4  
01_01_1110 + 8789741-8790616                                           28   6.4  

>08_02_0408 -
           16829483-16829545,16830359-16830467,16830650-16830874,
           16832033-16832046
          Length = 136

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 256 YPP*FWHFLFRGTFITLPHVVCYLWQ 179
           YPP F +FL    F+T+PH  C LW+
Sbjct: 7   YPPRFTYFLIILVFLTVPH-FCVLWK 31


>03_06_0410 -
           33728507-33729415,33729511-33729654,33730054-33730920,
           33731371-33731913
          Length = 820

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 75  KFTSKEVNYFVDIVLYESNYILKHLRRMKC*W*KNCHK*Q-TTCGSVIKVPRK 230
           K ++   N  +++ L ES  +L H RR+K    +     Q  TC SVI+ PR+
Sbjct: 545 KISAIRTNCAIELALDESIAVLNHKRRLKRSMERVASASQGYTCSSVIRTPRR 597


>02_01_0020 -
           127572-127637,127760-127819,127903-128004,128099-128194,
           128649-128756,128849-128899,129018-130118
          Length = 527

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 482 PEQHVSSTLFITKRREFDRRHLAFNSNMANS---LGQQQSEQ 366
           P   VSST  +T R    RRH AF++N ++    L Q QSE+
Sbjct: 25  PSPPVSSTHHLTLRIASPRRHFAFSANASSGSSRLKQIQSER 66


>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 342 PMYTTTHFCNTNIFLHVLF**LKPQ*YNNILRDFGTFFFVALLLHFHMLFVIC 184
           P+Y+  H  +  +FLHV    L    YN I R  G+    +LL  +H    IC
Sbjct: 323 PVYSNMHVDDDVVFLHVKL--LDLVGYNFISRTVGSILINSLLDAWHSCVYIC 373


>01_01_1110 + 8789741-8790616
          Length = 291

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 491 RRSPEQHVSSTLFITKRREFDRRHLAFNSNMANSLGQQQSEQR 363
           RR P    SS+L  +  R F RRH +  S  + S+ + +S ++
Sbjct: 239 RREPRLGTSSSLKGSFSRPFLRRHFSIGSRPSQSISESESARK 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,350
Number of Sequences: 37544
Number of extensions: 370491
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)