Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N07
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    30   0.32 
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    29   0.74 
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    28   1.7  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   2.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   5.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   6.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   6.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.9  

>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +1

Query: 433 DVFEMDEINDEFPETDLVLVIGANDTVNSAAEDDPNSPIAGMPVLKVWKANQ 588
           + F+ D   +E+P  + +  +G  DT+    ED   S +   P+  +  +NQ
Sbjct: 45  EYFDEDNNEEEYPSLESLKTVGNGDTIQDEEEDFEYSKLQARPLTGLGISNQ 96


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 334 ESGKKVRFAIHP--VAGRMPGQLNVL-LAEAGVPYDDVFEMDEINDEFPETDLVLVIGAN 504
           + G    + I P   A RMP  L+    A  GVP+   + +     E   +D+VLV+GA 
Sbjct: 100 KDGTHAEYCIIPEKAAVRMPSNLSFTEAASVGVPFTTAY-LALSRGETKGSDIVLVVGAL 158

Query: 505 DTVNSA 522
             V SA
Sbjct: 159 GAVGSA 164


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 594 SNEKINGSWICGRGQPDILQS-QHC 665
           +N  INGSWI G+ + ++L S Q C
Sbjct: 321 ANAAINGSWISGKRKEELLSSVQKC 345


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 469 PETDLVLVIGANDTVNSAAEDDPNSPIAGMPVLKVWKANQVVVMKRSMGVGYAAVDNPI- 645
           P T   LV G+ D      + D  +PIA M     W +        S+ +   ++DN I 
Sbjct: 144 PSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPDASI-IATGSMDNTIR 202

Query: 646 FYNPNTAMLLGDA 684
           F++P     +GDA
Sbjct: 203 FWDPKKGSPIGDA 215


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 49  SLMTIVGALIGS--SGAILSYIMCKAMNRSLPN 141
           S +T +G  +GS  SGAI + +M K + ++LP+
Sbjct: 502 STVTPIGGAVGSAISGAIWNSVMPKRLEKNLPS 534


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 166  TTGGSARPTDATHTELNVDSVAELIHRASNIII 264
            TTG +A P   T+       + E +HR  N+++
Sbjct: 1109 TTGNNANPYMLTYIRKEYRHIIECVHREHNLLL 1141


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 507 VISTDNKY*ISLGEFIINFIHFKYVIVWNSSFGQ*YVELSGHTTCNRVNSKTHFLAAFL 331
           ++  D  +  S G      +++K++ +WN++FG   + L   T    +N    FLAA L
Sbjct: 120 LVGYDGSFDFSSGATYPEDLNYKFMRLWNAAFGTLCIPLVYFTA---LNFNYSFLAATL 175


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 430 DDVFEMDEINDEFPETDLVLVIGANDTVNSAAEDDPNS 543
           DD+  +DE+  ++   DL+  I   +     ++D+P S
Sbjct: 255 DDLLSVDELKLKYSNPDLIKNIEREEEAEETSDDEPLS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,346
Number of Sequences: 5004
Number of extensions: 66577
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)