Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N07
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide n...   343   1e-94
U40417-1|AAA81411.1|  114|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-...    29   3.7  
U13642-1|AAG00041.1|  184|Caenorhabditis elegans Yeast ham (hydr...    29   3.7  
AY052772-1|AAL14111.1|  184|Caenorhabditis elegans HAM-1-like pr...    29   3.7  
AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative pren...    29   3.7  
Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical ...    28   8.6  
AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical...    28   8.6  

>U56965-10|AAB52670.1| 1041|Caenorhabditis elegans Nicotinamide
            nucleotide transhydrogenaseprotein 1 protein.
          Length = 1041

 Score =  343 bits (842), Expect = 1e-94
 Identities = 162/238 (68%), Positives = 198/238 (83%), Gaps = 2/238 (0%)
 Frame = +1

Query: 13   WALCAEGFMLNNSLMTIVGALIGSSGAILSYIMCKAMNRSLPNVILGGYGVTTGGS--AR 186
            WALCAEGFML+NSL+T++GALIGSSGAILS+IMCKAMNRSL NVILGG G  + G+  A+
Sbjct: 800  WALCAEGFMLDNSLLTVLGALIGSSGAILSHIMCKAMNRSLLNVILGGVGTKSKGTGEAK 859

Query: 187  PTDATHTELNVDSVAELIHRASNIIITPGYGLCVAKAQYPIAELVDLLKESGKKVRFAIH 366
              + T  E+     A+++  A ++II PGYGLC A+AQYPIA+LV  L++ G +VRFAIH
Sbjct: 860  AIEGTAKEIAPVETADMLLNARSVIIIPGYGLCAAQAQYPIAQLVKELQQRGVRVRFAIH 919

Query: 367  PVAGRMPGQLNVLLAEAGVPYDDVFEMDEINDEFPETDLVLVIGANDTVNSAAEDDPNSP 546
            PVAGRMPGQLNVLLAEAGVPYD V EM+EIN++F ETD+ LVIG+NDT+NSAAEDDPNS 
Sbjct: 920  PVAGRMPGQLNVLLAEAGVPYDIVEEMEEINEDFKETDVALVIGSNDTINSAAEDDPNSS 979

Query: 547  IAGMPVLKVWKANQVVVMKRSMGVGYAAVDNPIFYNPNTAMLLGDAKKTCDSLLERVK 720
            IAGMPVL+VW + QV+++KR++G GYAAVDNP+F+N NT MLLGDAKK  + LLE VK
Sbjct: 980  IAGMPVLRVWNSKQVIIVKRTLGTGYAAVDNPVFFNENTQMLLGDAKKMSEKLLEEVK 1037


>U40417-1|AAA81411.1|  114|Caenorhabditis elegans Hypothetical
           protein T08A9.6 protein.
          Length = 114

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 274 YGLCVAKAQYPIAELVDLLKESGKKVRFAIHPVAGRMPGQLNVLLAEAGV---PYDDVFE 444
           Y LC +K + P  EL+  LK S K +R  +  +      +L+ + AE      P    F+
Sbjct: 5   YSLCKSKNRRPPPELIPFLKLSSKALRIVLQELDAVHTFELSQVSAELSALINPAHHTFD 64

Query: 445 MDEIN 459
             E+N
Sbjct: 65  HIEVN 69


>U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-1
           protein protein.
          Length = 190

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 358 AIHPVAG--RMPGQLNVLLAEAGVPYDDVFEM 447
           A+H VAG  R P  + + L EAG+ Y+D  EM
Sbjct: 116 AVHCVAGLGRAPVLVAIALIEAGMKYEDAVEM 147


>U13642-1|AAG00041.1|  184|Caenorhabditis elegans Yeast ham
           (hydroxylaminopurinesensitivity) related protein 1
           protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 361 IHPVAGRMPGQLNVLLAEAGVPYDDVFEMDEINDEFPETD 480
           IH  AG+ PGQ+     +    +D  F+ D   + F E D
Sbjct: 121 IHVFAGKCPGQIVAPRGDTAFGWDPCFQPDGFKETFGEMD 160


>AY052772-1|AAL14111.1|  184|Caenorhabditis elegans HAM-1-like
           protein protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 361 IHPVAGRMPGQLNVLLAEAGVPYDDVFEMDEINDEFPETD 480
           IH  AG+ PGQ+     +    +D  F+ D   + F E D
Sbjct: 121 IHVFAGKCPGQIVAPRGDTAFGWDPCFQPDGFKETFGEMD 160


>AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative
           prenylated protein tyrosinephosphatase protein.
          Length = 190

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 358 AIHPVAG--RMPGQLNVLLAEAGVPYDDVFEM 447
           A+H VAG  R P  + + L EAG+ Y+D  EM
Sbjct: 116 AVHCVAGLGRAPVLVAIALIEAGMKYEDAVEM 147


>Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical
           protein F10A3.4 protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 380 VCPDNSTYYWPKLEFHTM 433
           +C D ST+YW +L+F +M
Sbjct: 275 ICVDCSTFYWTRLQFDSM 292


>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 93  YLVVHNVQSNEQISPQRHLGWLWSDDRWISS--THRRDTHRTQCRLSSRAYP 242
           +L+ ++      I+PQ HL    + D +ISS  TH + T +     SS  YP
Sbjct: 37  FLLFYDYSEPSDINPQAHLANSTTKDPFISSTKTHEKST-KVHVHTSSTPYP 87


>AC024755-8|AAF59636.2|  604|Caenorhabditis elegans Hypothetical
           protein Y34B4A.8 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 146 MTLGRDLFIALHIMYDKIAPELPMSAPTIVMSELFNIKPSAH 21
           M L RD F  ++ MY+K  PE+     T +   +F +    H
Sbjct: 205 MNLKRDYFKKMYEMYEKAIPEVERMIATALPRPVFGVPLDEH 246


>AC024214-12|AAF36072.2|  370|Caenorhabditis elegans Hypothetical
           protein Y77E11A.2 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +1

Query: 310 AELVDLLKESGKKVRFAIHPVAGRMPGQLNVL--LAEAGVPYDDVFEMDEINDEFPETDL 483
           A+L   L   G KV+  +     ++     ++  L +AG+    V   +++    PE DL
Sbjct: 58  ADLKKHLSSKGTKVQELLENEKKQVNAVQEIVSELGKAGIS-TKVVTREQLAQYLPEADL 116

Query: 484 VLVIGANDTVNSAAE-DDPNSPIAGM 558
           V+  G + T  +AA   + N+PI G+
Sbjct: 117 VISAGGDGTFLAAASVVNDNTPIIGI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,714,957
Number of Sequences: 27780
Number of extensions: 369741
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)