Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N07
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 611 WELDMRPWTTRYSTIPTLR 667
           W     PW TRY   PT R
Sbjct: 136 WRTCGNPWNTRYCLTPTER 154


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 611 WELDMRPWTTRYSTIPTLR 667
           W     PW TRY   PT R
Sbjct: 189 WRTCGNPWNTRYCLTPTER 207


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 534 IIFGRAIYSVISTDNKY*ISLGEFIINFIHFKYVIVWNSS 415
           ++FG +++ +I  D K  I      +  I   + + WN+S
Sbjct: 33  VVFGLSLHHIIDVDEKNQILTTNCWVTQIWTDHHLKWNAS 72


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 356 LLFTLLQVVCPDNSTYYWPKLEFHTMTYLKWM 451
           L   LL +   DNS +   K +  T T L W+
Sbjct: 12  LFGVLLLLTNADNSVHILSKYQLITSTTLNWL 43


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 242 WISSATESTLSS 207
           WISS TES L S
Sbjct: 340 WISSVTESVLKS 351


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 606 SFHYYNLIRFPYFEYRHSRNR*VRIIFGRAIYSVI 502
           S   Y  I  P   YR    R +R IFG  + ++I
Sbjct: 129 SIERYLAIYHPLRHYRSGLKRAIRSIFGAWLIALI 163



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 622 YAAVDNPIFYNPNTAMLLGDAKKTC 696
           ++   NPI YN  +A      K+TC
Sbjct: 307 FSTTINPILYNVMSAKYRNAFKETC 331


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 145 ILGGYGVTTGGSARPTDATHTE 210
           IL GY    GG  RP +   T+
Sbjct: 286 ILSGYHAIAGGQQRPDENVVTD 307


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 427 YDDVFEMDEINDEFPET 477
           YDD+ EM+ ++  F ET
Sbjct: 347 YDDIKEMEYLDKVFKET 363


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 116  LHIMYDKIAPELPMSAPTIVMS 51
            +H   ++ APE P++   +VMS
Sbjct: 1171 IHCQTEQDAPEAPIAIKALVMS 1192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,827
Number of Sequences: 438
Number of extensions: 4516
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)