Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_N05
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...   142   3e-35
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.9  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   5.2  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    26   5.2  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.1  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  142 bits (345), Expect = 3e-35
 Identities = 78/188 (41%), Positives = 120/188 (63%), Gaps = 18/188 (9%)
 Frame = +1

Query: 118 VRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFL 297
           +++++ RQ + Q+L+  +++SSA M +K L  VT  ESP+VVVLS SMEP+F RGDLLFL
Sbjct: 1   MQKLSFRQGLAQILNLLLVLSSAYMGYKTLSFVTDCESPVVVVLSESMEPSFQRGDLLFL 60

Query: 298 TN----YPE-------------EPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFL 426
            N    + E              PV +G+IVV+ +  R IPIVHRV+KL+E  N T   +
Sbjct: 61  DNRNPSFDEAKVPSVFEKIIYGSPVGIGDIVVYSLPDRPIPIVHRVVKLYESENQT-HLI 119

Query: 427 TKGDNNSVDDRGLYAQGQLWLTKKD-VVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLA 603
           TKGDNN +DD  ++ +   +L +++ ++G  RG+ PY+GM+TI++ +YP  K+ +L  L 
Sbjct: 120 TKGDNNKIDDVAMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLG 179

Query: 604 IYVLXHRE 627
           +  L  +E
Sbjct: 180 LLTLIQKE 187


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 334  IVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGLYA-QGQLWLTKKDVVG 510
            +V+F ++    PI+  + KL  + +  V+    G+ N   +R     +G +   +K++  
Sbjct: 1049 MVIFYLQQIPEPILPNLQKLSTQYSKIVRDNDYGNVNCWFNRDTECYRGSMQKGRKNIAL 1108

Query: 511  RARGFLPYVGMVTIYMNEYPKF 576
              RGF  Y G+ T Y  ++  +
Sbjct: 1109 LLRGFFCYYGLTTQYSFDWEAY 1130


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 443 IALMTEACMPRANCGSLKKMWLAVQEDFCHMLEWS 547
           ++L+  AC  R +  ++   W    E F ++L W+
Sbjct: 164 LSLLINACKDRLSSSAISLQWKKTLECFTNLLGWN 198


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 283 DLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRV 384
           DLL   N PE P+ + ++ V K+E  DI +V  V
Sbjct: 61  DLLAKINDPEHPLTLAQLSVVKLE--DIEVVDNV 92


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 485 GSLKKMWLAVQE 520
           GSLKK+W+ VQE
Sbjct: 485 GSLKKVWIVVQE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,728
Number of Sequences: 5004
Number of extensions: 56742
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)