Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_N02
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1015 + 33512023-33512359,33513550-33514082 111 9e-25
02_05_1014 + 33510108-33510471,33510857-33511362 74 2e-13
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 30 2.5
07_03_1532 - 27519701-27520831 29 4.4
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354... 29 4.4
05_04_0308 - 20081366-20082404,20082702-20083078,20084293-200846... 29 4.4
01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845 29 4.4
12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486... 29 5.9
04_04_0176 - 23329589-23331043 29 5.9
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 7.8
04_04_1575 + 34548774-34549109,34549979-34550185 28 7.8
>02_05_1015 + 33512023-33512359,33513550-33514082
Length = 289
Score = 111 bits (266), Expect = 9e-25
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 16/236 (6%)
Frame = +1
Query: 154 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 306
W + E D+G +LPP S ENG K V EY++D+ KVK+ RT+++ K +
Sbjct: 12 WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71
Query: 307 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPS 486
SKS +R++W KFGD+ + G + E V + +++ P D L S
Sbjct: 72 SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEPSASG-DPLASKS 130
Query: 487 SNVIFKCRTC--QGDHLTLYCPFK----HTQIXXXXXXXXXXXXXXXXXXSNKYIPPSS- 645
V+ CRTC +GDH T CP+K T+ Y+PPS
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYKDLAPQTEAFVDRPPTADGSGPPGGAVKGAYVPPSMR 190
Query: 646 AGRIPGRDQPPVRREDVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 813
+G + RR D ++R++NL E D+ +L + FGPV ++Y+A ++ TG
Sbjct: 191 SGAVDRVGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGPVSRVYVAVDQKTG 246
>02_05_1014 + 33510108-33510471,33510857-33511362
Length = 289
Score = 73.7 bits (173), Expect = 2e-13
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Frame = +1
Query: 193 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 354
PP V+ ENG+K EY+ + + K V++ T ++ + V+K A+R+ W+KFGD+
Sbjct: 36 PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95
Query: 355 ASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQGDHLT 534
A + T E++ ++ + +D + L ++ ++ + +G H T
Sbjct: 96 AHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLIPALDKGAALMVCRICNAKGKHWT 153
Query: 535 LYCP---FKHTQIXXXXXXXXXXXXXXXXXXSN---KYIPPSSAGRIPGRDQPPVRREDV 696
CP F Q+ + KY+PP R+ RR D
Sbjct: 154 SKCPNKDFAPLQLDALVDNNIPPNSGGDNGGGSRPGKYVPPKP------RESEMRRRNDE 207
Query: 697 TAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 813
++R++NL E D+ +L FGP+ + Y+A + TG
Sbjct: 208 NSVRVTNLSEDTREEDLRELFGSFGPLTRAYVALDHRTG 246
>01_07_0248 +
42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 121 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEK 297
D + E +A+WA Q VL P + LK D +V + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754
Query: 298 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 384
R + KS K T + F +S P NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783
>07_03_1532 - 27519701-27520831
Length = 376
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 555 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 451
+LKW + Q + T ++ A WW K PVI
Sbjct: 240 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPVI 274
>07_01_1218 -
11633829-11634628,11634713-11635050,11635349-11635445,
11635482-11635725,11636114-11636122
Length = 495
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 555 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 451
+LKW + Q + T ++ A WW K PVI
Sbjct: 332 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPVI 366
>05_04_0308 -
20081366-20082404,20082702-20083078,20084293-20084679,
20085038-20086000
Length = 921
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 555 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 451
+LKW + Q + T ++ A WW K PVI
Sbjct: 817 ILKWDLNIQRMEFPATLKRNYYARWWDKFTITPVI 851
>01_01_1117 - 8846649-8847658,8847925-8848024,8848810-8848845
Length = 381
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 555 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 451
+LKW + Q + T ++ A WW K PVI
Sbjct: 342 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPVI 376
>12_02_0483 +
19546295-19546397,19547163-19547482,19547606-19548611,
19549890-19549985,19550500-19551551
Length = 858
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 555 VLKWTIQCQMVSLTCTTLKDNIAGWWLKTIKLPVI 451
+LKW + Q + T ++ A WW K P+I
Sbjct: 722 ILKWDLNIQRMEFPATLKRNYYARWWDKFAITPII 756
>04_04_0176 - 23329589-23331043
Length = 484
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 673 PPVRREDVTAIRISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 813
PP TA+ I L + +A+++ + G +H L+ +K TG
Sbjct: 116 PPRASPPTTAVFIGELPYWTTDAEVEGALAPHGALHGLHFFTDKLTG 162
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 709 ISNLXNFAVEADIDDLVKGFGPVHKLYLAKEKSTG 813
+SNL D+ + FGPV +YL K+ +TG
Sbjct: 401 VSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTG 435
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 121 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 291
D+PV +F A W + V+ +E E LKIV K D+D +++ YK+
Sbjct: 85 DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,994,642
Number of Sequences: 37544
Number of extensions: 368645
Number of successful extensions: 1066
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -