Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_M20
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    29   1.3  
01_01_0536 - 3926450-3928447                                           27   5.2  
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549...    27   6.9  
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649...    27   9.1  
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270...    27   9.1  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    27   9.1  

>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 13  EQIFFKSSRAGVLDH----QSTLKTAQNVRETVHSVRRPRCSSGKTSTDLL 153
           EQIF  SS AGV +     Q   + ++ V E V+ +RR RCS  + S  +L
Sbjct: 332 EQIFGVSSLAGVPNQLVLEQYDNELSRKVNEVVNEIRRQRCSYLRYSLQVL 382


>01_01_0536 - 3926450-3928447
          Length = 665

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 271 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSC 131
           A V+W   I+     G+  +S  + V  +R S +  AVT V +L +C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171


>01_06_0876 -
           32654209-32654238,32654357-32654672,32654833-32654901,
           32655238-32655275,32655418-32655478,32655550-32655617,
           32655729-32655889,32656687-32656751,32656883-32656956,
           32658158-32658245,32658800-32658879,32659168-32659224,
           32659332-32659404,32659524-32659762,32659846-32660025,
           32660150-32660440
          Length = 629

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   PADEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSV 108
           P  E +F  +  AG+  H+  +K   N+RE+VH V
Sbjct: 458 PGSETLFPGNEVAGIY-HEIAMKDGINLRESVHGV 491


>05_04_0413 -
           21063868-21064344,21064416-21064482,21064865-21064948,
           21065028-21065158,21065504-21065560,21065818-21065866,
           21067357-21067442,21067715-21067792,21067952-21068074,
           21068705-21068794,21068796-21068849,21068923-21069020,
           21069093-21069160,21069688-21069777,21069870-21070117
          Length = 599

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 260 MERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVEV 135
           + +  S R   R   C+     ++DT+ R C S N   +V V
Sbjct: 326 IRKSRSIREFDRHATCVVAKYETVDTFYRRCSSANYISNVSV 367


>02_04_0130 +
           20025414-20025531,20026357-20026585,20026909-20027032,
           20027441-20027497,20027613-20027804,20027882-20027959,
           20028437-20028619,20028715-20028795,20029196-20029228,
           20029448-20029513,20029591-20029683,20030106-20030231,
           20030395-20030508,20030973-20031068,20031159-20031256,
           20031416-20031831,20032025-20032473,20032810-20032905
          Length = 882

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 224 PGDCIRDNRRSLDTYIRNCCSRNQSRSVEVLPELQRGRRTE*TVSRTF*AVFKVD 60
           P    R + RSL+   ++C    +  + E LP++ R  R + T S    A F  D
Sbjct: 674 PRHSSRSSGRSLEESDKSCPENTEGEAKENLPDVLRTTRDDATTSSNGEAFFSSD 728


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 10  DEQIFFKSSRAGVLDHQSTLKTAQNVRETVHSVRRPRCSSGKTSTDLLWLRLQQL 174
           D+ + +   + G+   +S  K  + + E  +S   P  SSG   +D +W RL +L
Sbjct: 77  DDVVGWHYDKRGLFSMKSAYKVQKEI-ERRNSRSAPASSSGGAQSDQVWKRLWKL 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,109,547
Number of Sequences: 37544
Number of extensions: 117697
Number of successful extensions: 369
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)